FC920541

Overview
NameFC920541
Unique NameFC920541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_VACCP (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain L-IVP) GN=F14 PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.310e-91
Identity = 158/210 (75.24%), Postives = 180/210 (85.71%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  +T DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGF++AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + ERLIAFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:    2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKVTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL 211          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_DANRE (Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.812e-91
Identity = 160/218 (73.39%), Postives = 186/218 (85.32%), Query Frame = 3
Query:   66 KMPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            K  ++ EEPLL  NP RF +FPIQY  IW+MYKKAEASFWTAEEVDLS+DL+HW++L  +E++F++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKDS E+  LF+AIET+PCV KKA WALNWI D +  + ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:   60 KKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIGDKNARYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL 277          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_VARV (Ribonucleoside-diphosphate reductase small chain OS=Variola virus GN=F4L PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.492e-91
Identity = 158/210 (75.24%), Postives = 178/210 (84.76%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EP+LA NP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  LT DEK+F+ HVLAFFAASDGIV ENLA RF  EVQ+ EAR FYGFQ+AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + ERLIAFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:    2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL 211          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_SPISO (Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.892e-90
Identity = 158/211 (74.88%), Postives = 183/211 (86.73%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EPLLA NP RF + PIQY  IW+MYKKAEASFWTAEEVDLS+D+ HWE+L  +EKHF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKD  E++ LF+AIET+PCV +KA WA+ WI D S ++AER++AFA VEGIFFSGSF +IFWLKKRG+MPGLTFSNELISRDEGLHCDFACL++S L
Sbjct:   62 EPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWINDDSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDEGLHCDFACLMFSHL 272          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_MACFA (Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca fascicularis GN=RRM2 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.227e-90
Identity = 156/216 (72.22%), Postives = 183/216 (84.72%), Query Frame = 3
Query:   72 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            P + +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWE+L  +E++F++HVLAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQIA+ENIHSEMYSLL++TYIKD  E+  LF+AIET+PCV KKA WAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:   65 PGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVEKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL 280          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens GN=RRM2 PE=1 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.227e-90
Identity = 156/216 (72.22%), Postives = 183/216 (84.72%), Query Frame = 3
Query:   72 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            P + +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWE+L  +E++F++HVLAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQIA+ENIHSEMYSLL++TYIKD  E+  LF+AIET+PCV KKA WAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:   65 PGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL 280          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_DICDI (Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium discoideum GN=rnrB-1 PE=2 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.092e-89
Identity = 157/211 (74.41%), Postives = 179/211 (84.83%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EP+L  N DRF +FPI+YP IW MYKKA AS W AEE+DL  D   WE  LT +E+HF++HVLAFFAASDGIV ENLA RFM+EVQ+ EAR FYGFQIAIENIHSE YSLL+ETYIKD   K++LF+AIET+PC+ KKA WAL WI+ S++FAERL+AFA VEGIFFSGSFC+IFWLKKRGLM GLTFSNELISRDEGLHCDFACLLY+ L
Sbjct:   12 EPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDKQTKDKLFNAIETIPCIKKKAEWALRWINDSDSFAERLVAFAAVEGIFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKL 222          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_TRYBB (Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma brucei brucei GN=RNR2 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.313e-88
Identity = 150/208 (72.12%), Postives = 170/208 (81.73%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 707
            EEPLL  NPDR+ +FPI+YP IW+ YK+AE+S WT EE+DL  D+  WE L   E+HF+ HVLAFFAASDGIVLENLA RFM EVQV E R FYGFQIA+ENIHSE YS+L++TY+ D DEK RL HAI T+PC+ KKA WA+ WI    +F  RL+AFA VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH DFACLLY
Sbjct:   16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTSFPTRLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY 223          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2B_MACFA (Ribonucleoside-diphosphate reductase subunit M2 B OS=Macaca fascicularis GN=RRM2B PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.958e-87
Identity = 155/212 (73.11%), Postives = 177/212 (83.49%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EEPLL  +  RF +FPIQYP IW+MYK+A+ASFWTAEEVDLS+DL HW  L ADEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VEGIFFSGSF AIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL 242          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2B_PONAB (Ribonucleoside-diphosphate reductase subunit M2 B OS=Pongo abelii GN=RRM2B PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.557e-87
Identity = 154/212 (72.64%), Postives = 177/212 (83.49%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EEPLL  +  RF +FPIQYP IW+MYK+A+ASFWTAEEVDLS+DL HW  L ADEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VEG+FFSGSF AIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL 242          
The following BLAST results are available for this feature:
BLAST of FC920541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RIR2_VACCP1.310e-9175.24Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DANRE3.812e-9173.39Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_VARV8.492e-9175.24Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SPISO1.892e-9074.88Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_MACFA3.227e-9072.22Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_HUMAN3.227e-9072.22Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_DICDI2.092e-8974.41Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_TRYBB2.313e-8872.12Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2B_MACFA1.958e-8773.11Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_PONAB2.557e-8772.64Ribonucleoside-diphosphate reductase subunit M2 B ... [more]

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Properties
Property NameValue
Genbank descriptionC32009G02EF RVDevelop1 Citrus clementina cDNA clone C32009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920541 ID=FC920541; Name=FC920541; organism=Citrus clementina; type=EST; length=717bp
GGTCCTCATCAACCAAAGAAATAGAAAAAAATATCTCTCTATTCTCCCGA
ATTAGTGCGCTTACCAAAATGCCCTCGATTCCTGAAGAGCCGCTTCTAGC
CCCAAATCCCGATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTT
GGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTT
GATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAA
GCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG
TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAG
GCGCGTGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGA
AATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGA
ACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCC
ACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATT
AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCG
CGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCAGGATTAACATTCTCA
AACGAGTTGATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT
GTTGTACAGTTTATTGA
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