FC920541

Overview
NameFC920541
Unique NameFC920541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2B_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 B OS=Homo sapiens GN=RRM2B PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.557e-87
Identity = 154/212 (72.64%), Postives = 177/212 (83.49%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EEPLL  +  RF +FPIQYP IW+MYK+A+ASFWTAEEVDLS+DL HW  L ADEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VEG+FFSGSF AIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL 242          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2B_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus GN=Rrm2b PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.696e-87
Identity = 154/212 (72.64%), Postives = 176/212 (83.02%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EEPLL  +  RF +FPIQYP IW MYK+A+ASFWTAEEVDLS+DL HW  L +DEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VEGIFFSGSF AIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYL 242          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_NEUCR (Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa GN=rnr-2 PE=3 SV=2)

HSP 1 Score: 315.849 bits (808), Expect = 1.403e-85
Identity = 154/222 (69.37%), Postives = 179/222 (80.63%), Query Frame = 3
Query:   57 ALTKMPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            A T  P    EPLL  NP RF +FPI+Y +IW+MYKKAEASFWTAEE+DLS+DL  W   L  DEK F++H+LAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQI +ENIHSE YSLL++TYIK+  ++  LF+AI+T+PC+ KKA WAL WI D S TFA+RL+AFA VEGIFFSG+F +IFWLKKRGLMPGLTFSNELISRDEGLH DFACLL+S L
Sbjct:   67 APTLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSSTFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL 288          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_DROME (Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila melanogaster GN=RnrS PE=1 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 4.082e-85
Identity = 157/239 (65.69%), Postives = 184/239 (76.99%), Query Frame = 3
Query:    3 SSSTKEIEKNISLFSRISALTKMPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            SS+   I K+ +     S     PS+  EPLL  NP RF +FPIQY  IW+MYKKAEASFWT EEVDLS+DL  W  L  DE+HF++HVLAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQIA+EN+HSEMYS+L++TYI+D  ++  LF+AIET+P V +KA WAL+WI   S  F ER+IAFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFA L++  L
Sbjct:   48 SSTVNGIGKSANSLMEKSVTPFDPSL--EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHL 284          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_LEIAM (Ribonucleoside-diphosphate reductase small subunit OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.715e-83
Identity = 142/209 (67.94%), Postives = 168/209 (80.38%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            EEPL   NP R+ +FPIQY  IW  YK+ E+  WT EE+DL  D++ W  L   E+HF+ HVLAFFA SDGIV+ENLA RFM++V+V EARAFYGFQ+ +ENIHSE YS+LL+TYI DS+EK RL HAI+T+PC+ KKA W + WI  S +F +RLI FA VEGIFFSGSFCA+FWLKKRGLMPGLTFSNELISRDEGLH DFACLLY+
Sbjct:   24 EEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGSSASFQQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYN 232          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_SWPVK (Ribonucleoside-diphosphate reductase small chain OS=Swinepox virus (strain Kasza) GN=C14L PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.925e-83
Identity = 143/210 (68.10%), Postives = 174/210 (82.86%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EP+L  +  RF +FPI+Y  IW+MYK++ ASFWT EEVDLS+DL  W+ LT DEK+F+ H+LAFFA+SDGIV ENLA RF  +VQ +EAR FYGFQIA+ENIHSEMYSLL++TY++D+ EK  LF+AIET+ CV KKA WA  WI  ++ + ER++AFA VEGIFFSGSF AIFW+KKRGLMPGLTFSNELISRDEGLHCDFACL++  L
Sbjct:    2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIETMECVKKKADWARKWISSNKVYGERVVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL 211          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_YLDV (Ribonucleoside-diphosphate reductase small chain OS=Yaba-like disease virus GN=20L PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.235e-82
Identity = 145/211 (68.72%), Postives = 174/211 (82.46%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EP+L P  +++ +FPI Y  IW+MYKKA ASFWT EEVDLS+D   W  L+ +EK+F+ H+LAFFAASDGIV ENLA RF +EVQ++EAR FYGFQIA+ENIHSEMYSLL++TYI DS EKN LF+AIE + CV +KA WA  WI+  + T+ ERL+AFA VEGIFFSGSF AIFW+KKRGLMPGLTFSNELISRDEGLHCDFAC+++  L
Sbjct:    6 EPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIENMNCVKQKANWAKKWIESKNRTYGERLVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFKHL 216          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_PLAF4 (Ribonucleoside-diphosphate reductase small chain OS=Plasmodium falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.738e-81
Identity = 140/210 (66.67%), Postives = 167/210 (79.52%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            E +L    DRF ++PI YP +W+ YKKAEASFWTAEE+DLS DL+ +E L  +EKHF+ HVLAFFAASDGIVLENLA +F+ EVQ+ EA+ FY FQIA+ENIHSE YSLL++ YIKD  E+  LFHAIE +P V  KA WA  WI+ + +FAER++A ACVEGI FSGSFCAIFW KK+  + GLTFSNELISRDEGLH DF CL+YSLL
Sbjct:   31 EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLL 240          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_ENCCU (Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon cuniculi GN=ECU06_0730 PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.576e-81
Identity = 145/208 (69.71%), Postives = 171/208 (82.21%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 707
            E LL P  +RF + PI+Y  IW+MYKKAE+SFWT EEV L +D+  W  L A E+HF+++VLAFFAASDGIV  NL  RF TEV+V EAR FYGFQ+AIENIHSEMYSLL++TYI+D+DEKN LF AI T+P V +KA WA+ WI D +  FA RL+AFACVEGIFFSG+F +IFWLKKRGLMPGLTFSNELISRDEGLHC+FACLL+
Sbjct:    8 ELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNAKERHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYIRDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSDFATRLVAFACVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLH 215          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_CAEEL (Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis elegans GN=rnr-2 PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.739e-79
Identity = 143/212 (67.45%), Postives = 168/212 (79.25%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            +EP+L    +RF +FP+++  IW  YKKA ASFWT EEVDL +D+  WE +  DE++F++ +LAFFAASDGIV ENL  RF  EVQV+EAR FYGFQIAIENIHSEMYS L+ETYI+D  E+N LF+A++    + KKA WAL WI D   +FAERLIAFA VEGIFFSGSF +IFWLKKRGLMPGLT SNELISRDEGLH DFACLLYS L
Sbjct:   61 DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIRDETERNTLFNAVDEFEFIKKKADWALRWISDKKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSKL 272          
The following BLAST results are available for this feature:
BLAST of FC920541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RIR2B_HUMAN2.557e-8772.64Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_MOUSE5.696e-8772.64Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2_NEUCR1.403e-8569.37Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DROME4.082e-8565.69Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_LEIAM1.715e-8367.94Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_SWPVK2.925e-8368.10Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_YLDV3.235e-8268.72Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_PLAF42.738e-8166.67Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ENCCU3.576e-8169.71Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_CAEEL9.739e-7967.45Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC32009G02EF RVDevelop1 Citrus clementina cDNA clone C32009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920541 ID=FC920541; Name=FC920541; organism=Citrus clementina; type=EST; length=717bp
GGTCCTCATCAACCAAAGAAATAGAAAAAAATATCTCTCTATTCTCCCGA
ATTAGTGCGCTTACCAAAATGCCCTCGATTCCTGAAGAGCCGCTTCTAGC
CCCAAATCCCGATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTT
GGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTT
GATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAA
GCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG
TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAG
GCGCGTGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGA
AATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGA
ACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCC
ACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATT
AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCG
CGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCAGGATTAACATTCTCA
AACGAGTTGATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT
GTTGTACAGTTTATTGA
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