FC920541

Overview
NameFC920541
Unique NameFC920541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_SCHPO (Ribonucleoside-diphosphate reductase small chain OS=Schizosaccharomyces pombe GN=suc22 PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.837e-77
Identity = 144/213 (67.61%), Postives = 170/213 (79.81%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            +E +L PNP RF +FPI+Y +IW+ YKKAEASFWTAEE+DLS+DL  W+  L ADE++F++ VLA+FAASDGIV ENL  RF +EVQ+ EAR  YGFQI IENIHSE YSLLL+TYI++  EK R F AI T+  +  KA WAL WI D   T+A RL+AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELI RDEGLH DFACL++S L
Sbjct:   65 DEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWINDEDSTYAIRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFSHL 277          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_PLAFG (Ribonucleoside-diphosphate reductase small subunit OS=Plasmodium falciparum (isolate FCR-3 / Gambia) GN=RNR2 PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.837e-77
Identity = 136/208 (65.38%), Postives = 162/208 (77.88%), Query Frame = 3
Query:   93 LLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            +L    DRF ++PI YP ++  YKKAEA FWTAEE+D S DL+ +E L  +EKHF+ HVLAFFAASDGIVLENLA  F+ EVQ+ EA+ FY FQIA+ENIHSE YSLL++ YIKD  E+  LFHAIE +P V  KA WA  WI+ + +FAER++A ACVEGI FSGSFCAIFW KK+  + GLTFSNELISRDEGLH DF CL+YSLL
Sbjct:    4 ILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLL 211          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_YEAST (Ribonucleoside-diphosphate reductase small chain 1 OS=Saccharomyces cerevisiae GN=RNR2 PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 3.464e-76
Identity = 137/213 (64.32%), Postives = 168/213 (78.87%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            EEPLL  + +R  +FPI+Y +IW+ YK+AEASFWTAEE+DLS+D+  W   +  +E+ F++ VLAFFAASDGIV ENL   F TEVQ+ EA++FYGFQI IENIHSE YSLL++TYIKD  E   LF+AI T+P + +KA WAL WI D    F ERL+AFA +EG+FFSGSF +IFWLKKRG+MPGLTFSNELI RDEGLH DFACLL++ L
Sbjct:   75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHL 287          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_RSIV (Ribonucleoside-diphosphate reductase small chain OS=Red sea bream iridovirus GN=RR-2 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.736e-63
Identity = 121/202 (59.90%), Postives = 150/202 (74.26%), Query Frame = 3
Query:  111 DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHW-EALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQ-VAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGS-ETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 707
            DR+ + P   P +W MYKKA ASFWT EEVDLS D+RHW + LT  E+ F++H+LAFFA +DGIV +NL   F  E+  + EARAFYGFQ+AIENIH+EMY+ L+ T +   ++   LF A E +PCV  KA WA  W++ + +  A RL+AFA VEG+ FSGSF AIFWLKKR LMPGL FSNELISRDEGLHCDFAC+L+
Sbjct:    2 DRYVLRPND-PHLWAMYKKAVASFWTVEEVDLSTDVRHWTDKLTEAERRFMSHILAFFAMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQA-ALFSAAEDMPCVKAKAQWAAQWLNATHKPIATRLLAFAAVEGVMFSGSFAAIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLF 201          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_MIMIV (Ribonucleoside-diphosphate reductase small chain OS=Acanthamoeba polyphaga mimivirus GN=RNR2 PE=3 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.257e-58
Identity = 103/216 (47.69%), Postives = 153/216 (70.83%), Query Frame = 3
Query:   78 IPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA-LTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGL--MPGLTFSNELISRDEGLHCDFACLLYSLL 716
            I +EP+L+   +++ + PI+Y ++W+ YK    ++WT EEVDL++D+  W   L+ D+++F+ HVLAFFAA+DGIV  N+    +  V++ EA   YGFQ A+EN H EMYSL+L T++KD   +N+L ++I+T+P + KKA W   WI   +T+A +L+AF+ VEG+FFSGSF +IFWLK R +  MPGL  SN+ I+RDE  H + AC++YSLL
Sbjct:   96 IMKEPILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWNNHLSDDDRNFIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAMENAHGEMYSLMLTTFVKDDALRNKLINSIKTMPSIKKKADWCNKWIKSDKTYAHKLVAFSIVEGVFFSGSFASIFWLKTREMHVMPGLIISNQFIARDENKHVELACIMYSLL 311          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_ASFB7 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=Ba71V-044 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.028e-53
Identity = 101/209 (48.33%), Postives = 131/209 (62.68%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            E LL  N  RF +FPIQ+P+ W  YKK E+  WTA+EVD+ +D+  WEA+   ++ F   +LAFF  +D IV+ENL   FM E++V E   FY  Q A E +HSE YS+ ++T I D  E+ R+F  IE  P + K A W   W+D    T  ERL+ FA VEGI F   F AI +LK++ +MPGL   NE ISRDEG+HC FAC L S
Sbjct:    9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIKKMAQWVRQWMDPDRNTLGERLVGFAAVEGILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLIS 217          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_ASFM2 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-052 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.179e-53
Identity = 100/209 (47.85%), Postives = 131/209 (62.68%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            E LL  N  RF +FPIQ+P+ W  YKK E+  WTA+EVD+ +D+  WEA+   ++ F   +LAFF  +D IV+ENL   FM E++V E   FY  Q A E +HSE YS+ ++T I D  E+ R+F  IE  P + K A W   W+D    +  ERL+ FA VEGI F   F AI +LK++ +MPGL   NE ISRDEG+HC FAC L S
Sbjct:    2 EELLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIKKMAQWVRQWMDPARNSLGERLVGFAAVEGILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLIS 210          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_ASFWA (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=War-054 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.199e-52
Identity = 100/209 (47.85%), Postives = 133/209 (63.64%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSE-TFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            E LL  N  RF +FPIQ+P+ W  YKK E+  WTA+EVD+ +D+  WEA+   ++ F   +LAFF  +D IV+ENL   FM E++V E   FY  Q A E +HSE YS+ ++T I D  E+ R+F  IE  P + K A W   W+D ++ +  ERL+ FA VEGI F   F AI +LK++ +MPGL   NE ISRDEG+HC FAC L S
Sbjct:    2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIKKMAQWVRQWMDPTKNSLGERLVGFAAVEGILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLIS 210          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_ASFP4 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-056 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.199e-52
Identity = 100/209 (47.85%), Postives = 133/209 (63.64%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSE-TFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            E LL  N  RF +FPIQ+P+ W  YKK E+  WTA+EVD+ +D+  WEA+   ++ F   +LAFF  +D IV+ENL   FM E++V E   FY  Q A E +HSE YS+ ++T I D  E+ R+F  IE  P + K A W   W+D ++ +  ERL+ FA VEGI F   F AI +LK++ +MPGL   NE ISRDEG+HC FAC L S
Sbjct:    2 EELLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKSQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIKKMAQWVRQWMDPTKNSLGERLVGFAAVEGILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLIS 210          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_ASFK5 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-056 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.950e-52
Identity = 99/209 (47.37%), Postives = 131/209 (62.68%), Query Frame = 3
Query:   87 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            E LL  +  RF +FPIQ+P+ W  YKK E+  WTA+EVD+ +D+  WEA+   ++ F   +LAFF  +D IV+ENL   FM E++V E   FY  Q A E +HSE YS+ ++T I D  E+ R+F  IE  P + K A W   W+D    +  ERL+ FA VEGI F   F AI +LK++ +MPGL   NE ISRDEG+HC FAC L S
Sbjct:    2 EELLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIRKMAQWVQQWMDPVKNSLGERLVGFAAVEGILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLIS 210          
The following BLAST results are available for this feature:
BLAST of FC920541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RIR2_SCHPO1.837e-7767.61Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_PLAFG1.837e-7765.38Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_YEAST3.464e-7664.32Ribonucleoside-diphosphate reductase small chain 1... [more]
RIR2_RSIV5.736e-6359.90Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_MIMIV3.257e-5847.69Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFB77.028e-5348.33Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFM29.179e-5347.85Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFWA1.199e-5247.85Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFP41.199e-5247.85Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ASFK55.950e-5247.37Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC32009G02EF RVDevelop1 Citrus clementina cDNA clone C32009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920541 ID=FC920541; Name=FC920541; organism=Citrus clementina; type=EST; length=717bp
GGTCCTCATCAACCAAAGAAATAGAAAAAAATATCTCTCTATTCTCCCGA
ATTAGTGCGCTTACCAAAATGCCCTCGATTCCTGAAGAGCCGCTTCTAGC
CCCAAATCCCGATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTT
GGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTT
GATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAA
GCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG
TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAG
GCGCGTGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGA
AATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGA
ACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCC
ACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATT
AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCG
CGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCAGGATTAACATTCTCA
AACGAGTTGATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT
GTTGTACAGTTTATTGA
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