FC920541

Overview
NameFC920541
Unique NameFC920541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR4_YEAST (Ribonucleoside-diphosphate reductase small chain 2 OS=Saccharomyces cerevisiae GN=RNR4 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.807e-48
Identity = 94/212 (44.34%), Postives = 142/212 (66.98%), Query Frame = 3
Query:   84 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSET-FAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            +E LL  N  RF MFPI+Y +IW  YKK EASFWTAEE++L++D   ++ LT D+K ++ ++LA   +SD +V + L   F  ++Q  E ++FYGFQI +ENI+SE+YS++++ + KD  +   LF  I  +P V  KA +   WI   ++ +AERL+AFA  EGIF +G++ ++FWL  + +MPGL  +N  I RD G + DF+CLL++ L
Sbjct:   24 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKD-PKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHL 234          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_OSHV1 (Ribonucleoside-diphosphate reductase small chain OS=Ostreid herpesvirus 1 GN=ORF20 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 65/206 (31.55%), Postives = 96/206 (46.60%), Query Frame = 3
Query:  111 DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAI---ETVPCVAKKATWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 716
            D   + P  Y Q+ +   K E+S W   E+D   D+  WE ++ +E+  V  VLAFFA  D +V + +A  F  E  + E + F  +Q   E +H  +Y+  L+  +KD      L +A    E  P + KK  W    I   +++  E ++   C E I F+ SF AI    +   M  L   NE I RDE LH  F   L  L+
Sbjct:   70 DHALLKPAVYQQLRDFATKMESSSWQQTEIDAESDIPTWEQISENERDCVRKVLAFFAVGDTLVKDRIA-IFADEFPLPECKDFIDWQTVNEGVHQRVYNNYLDALVKDKIYLADLVNAYKDPEFAP-IKKKVDWLGKIISVENDSRGEMVVGQVCTEAIMFAASF-AILLKFRAPYMRALVLGNEFIRRDETLHFRFYAELLRLM 272          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_EBVG (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain GD1) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  183 WTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK-DSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            W A  + L++D    + L   +  F   +  F A ++ +V  N+    +T  +  +   +Y  Q A+EN+H E Y+ +L      D    N    AI     +  K +W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPG+  +N  ISRDE LH   A LLY+
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYN 200          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_EBVB9 (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain B95-8) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  183 WTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK-DSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            W A  + L++D    + L   +  F   +  F A ++ +V  N+    +T  +  +   +Y  Q A+EN+H E Y+ +L      D    N    AI     +  K +W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPG+  +N  ISRDE LH   A LLY+
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYN 200          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_EBVA8 (Ribonucleoside-diphosphate reductase small chain OS=Epstein-Barr virus (strain AG876) GN=BaRF1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  183 WTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK-DSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            W A  + L++D    + L   +  F   +  F A ++ +V  N+    +T  +  +   +Y  Q A+EN+H E Y+ +L      D    N    AI     +  K +W  + +  + T  E+++ F  +EGIFF  SF +I  L+ RGLMPG+  +N  ISRDE LH   A LLY+
Sbjct:   25 WFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYN 200          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_HHV2H (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 2 (strain HG52) GN=UL40 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 58/207 (28.02%), Postives = 100/207 (48.31%), Query Frame = 3
Query:   96 LAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            + P P+R+  +  Q P I  +   +  + W   E+    D      L+  E  F   + AF +A+D +V ENL G      +  +   +Y  Q  IE +HS +Y+++      ++D+  R + A  T+  P +  K  W    +   ++  E+ I    +EG+FF+ SF AI +L+   L+     SN+LISRDE +H   +C +Y+
Sbjct:   27 VCPTPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELGFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVA-RTINHPAIRVKVDWLEARVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYN 230          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_HHV23 (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 2 (strain 333) PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 58/207 (28.02%), Postives = 100/207 (48.31%), Query Frame = 3
Query:   96 LAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            + P P+R+  +  Q P I  +   +  + W   E+    D      L+  E  F   + AF +A+D +V ENL G      +  +   +Y  Q  IE +HS +Y+++      ++D+  R + A  T+  P +  K  W    +   ++  E+ I    +EG+FF+ SF AI +L+   L+     SN+LISRDE +H   +C +Y+
Sbjct:   27 VCPTPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELGFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVA-RTINHPAIRVKVDWLEARVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYN 230          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_HHV11 (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 1 (strain 17) GN=UL40 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 59/205 (28.78%), Postives = 99/205 (48.29%), Query Frame = 3
Query:  102 PNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            P+P+R+  +  Q P I  +   +  + W   E+    D      L+  E  F   + AF +A+D +V ENL G      +  +   +Y  Q  IE +HS +Y+++      ++D+  R + A  T+  P +  K  W    +    +  E+ I    +EGIFF+ SF AI +L+   L+     SN+LISRDE +H   +C +Y+
Sbjct:   32 PDPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVA-GTINHPAIRAKVDWLEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYN 233          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_VZVO (Ribonucleoside-diphosphate reductase small chain OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF18 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 55/192 (28.65%), Postives = 93/192 (48.44%), Query Frame = 3
Query:  141 PQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            P I  +   + ++ W   +  +  D ++ + LT DE  F   +  F +A+D +V  NL G         +   +Y  Q  IE +H+ +YS + +  +   DE  R+ +   T+  P + +K  W    +  + + AE+ I    +EGIFF  SF AI +L+  GL       N+LISRDE +H   +C +Y+
Sbjct:   16 PDINNLRALSISNRWLESDFIIEDDYQYLDCLTEDELIFYRFIFTFLSAADDLVNVNL-GSLTQLFSQKDIHHYYIEQECIEVVHARVYSQI-QLMLFRGDESLRVQYVNVTINNPSIQQKVQWLEEKVRDNPSVAEKYILMILIEGIFFVSSFAAIAYLRNNGLFVVTCQFNDLISRDEAIHTSASCCIYN 205          
BLAST of FC920541 vs. ExPASy Swiss-Prot
Match: RIR2_VZVD (Ribonucleoside-diphosphate reductase small chain OS=Varicella-zoster virus (strain Dumas) GN=ORF18 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 55/192 (28.65%), Postives = 93/192 (48.44%), Query Frame = 3
Query:  141 PQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 710
            P I  +   + ++ W   +  +  D ++ + LT DE  F   +  F +A+D +V  NL G         +   +Y  Q  IE +H+ +YS + +  +   DE  R+ +   T+  P + +K  W    +  + + AE+ I    +EGIFF  SF AI +L+  GL       N+LISRDE +H   +C +Y+
Sbjct:   16 PDINNLRALSISNRWLESDFIIEDDYQYLDCLTEDELIFYRFIFTFLSAADDLVNVNL-GSLTQLFSQKDIHHYYIEQECIEVVHARVYSQI-QLMLFRGDESLRVQYVNVTINNPSIQQKVQWLEEKVRDNPSVAEKYILMILIEGIFFVSSFAAIAYLRNNGLFVVTCQFNDLISRDEAIHTSASCCIYN 205          
The following BLAST results are available for this feature:
BLAST of FC920541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RIR4_YEAST6.807e-4844.34Ribonucleoside-diphosphate reductase small chain 2... [more]
RIR2_OSHV13.295e-1831.55Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVG1.635e-1731.64Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVB91.635e-1731.64Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EBVA81.635e-1731.64Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV2H2.136e-1728.02Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV232.136e-1728.02Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HHV118.116e-1728.78Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VZVO1.808e-1628.65Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VZVD1.808e-1628.65Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC32009G02EF RVDevelop1 Citrus clementina cDNA clone C32009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920541 ID=FC920541; Name=FC920541; organism=Citrus clementina; type=EST; length=717bp
GGTCCTCATCAACCAAAGAAATAGAAAAAAATATCTCTCTATTCTCCCGA
ATTAGTGCGCTTACCAAAATGCCCTCGATTCCTGAAGAGCCGCTTCTAGC
CCCAAATCCCGATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTT
GGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTT
GATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAA
GCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG
TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAG
GCGCGTGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGA
AATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGA
ACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCC
ACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATT
AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCG
CGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCAGGATTAACATTCTCA
AACGAGTTGATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT
GTTGTACAGTTTATTGA
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