FC920548

Overview
NameFC920548
Unique NameFC920548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14158 contig Ccv1_Contig14158:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 1
Query:   91 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 618
            G GYD   + FSP+GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ ADAR+L   AR EA+ FR  +GY +P+  LA  +A     YT ++ +RP G   M+ S     G +L+  DP+G  +G+   + G   Q A   +EK
Sbjct:    5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 69/176 (39.20%), Postives = 101/176 (57.39%), Query Frame = 1
Query:   91 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 618
            G GYD   + FSP+GR+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ ADAR+L   AR EA+ FR  +GY +P+  LA  +A     YT ++ +RP G   M+ S     G +L+  DP+G  +G+   + G   Q A   +EK
Sbjct:    5 GTGYDLSASTFSPDGRVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 67/184 (36.41%), Postives = 106/184 (57.61%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD------KSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR +  FSPEGRLFQVEYA +A+K  G T+IGV+ KD+V +  +K++   L++  SV  LF I  ++G   +G+TADART+++ AR +    RF Y     ++   + I D      + +   +    RP GV  ++  IDE  GP+L+  +P+G +F ++A + G   + A + L K+   D
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEH-GPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKD 189          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 65/178 (36.52%), Postives = 105/178 (58.99%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            Y   +T FSP G+L Q+E+A  AV  +G TS+G++  + V + T+KK+P  L+D TSV  +  +T  +G++ +GM  D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  ++   D+  GP+L++ DP+G +F  KA++ G     A  FLEK+   D
Sbjct:    6 YSFSLTTFSPSGKLVQIEHALTAV-GSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED 181          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 65/178 (36.52%), Postives = 105/178 (58.99%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            Y   +T FSP G+L Q+E+A  AV  +G TS+G++  + V + T+KK+P  L+D TSV  +  +T  +G++ +GM  D R LV+++R +A ++   Y   +PV  L +  A   Q +TQ   +RP GV  ++   D+  GP+L++ DP+G +F  KA++ G     A  FLEK+   D
Sbjct:    6 YSFSLTTFSPSGKLVQIEHALTAV-GSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED 181          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 68/173 (39.31%), Postives = 99/173 (57.23%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 618
            YDR ITIFSP+GRL+QVEYA +AVK  G  S+G+R  D + +   K+    L++ TSV  +     ++G+ + G  ADAR L+  AR +A   R +YG  + ++ L K + D  Q YTQ    RP GV  ++  I E+  PRL++ DP+G  +  KA S G    +    LE+
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKR-GTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGI-EDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEE 180          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 65/161 (40.37%), Postives = 96/161 (59.63%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAG 582
            YDR IT+FSP+G LFQVEYA +AVK  G T++GVRGKD V +  +KK   KL D  +V  +  +   + +   G+TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG 162          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 69/181 (38.12%), Postives = 105/181 (58.01%), Query Frame = 1
Query:  100 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY---TQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            YDR +  FSPEGRLFQVEYA +A+K  G T+IG++ KD V +  +K+V   LL+ +SV  +  I +++G   +G+ ADARTLV+ AR E    RF YG  M V+   + I D +  +    + +  RP GV  ++   DE  GP L+  DP+G F+   A + G   + A + L+++   +
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKE 186          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GY   +T FSP G+L Q+EYA  AV A G  S+G++  + V + T+KK    L D  SV  + PITK++GL+ +GM  D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED 181          
BLAST of FC920548 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 1
Query:   97 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 633
            GY   +T FSP G+L Q+EYA  AV A G  S+G++  + V + T+KK    L D  SV  + PITK++GL+ +GM  D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAV-AGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED 181          
The following BLAST results are available for this feature:
BLAST of FC920548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA3_HUMAN5.154e-2739.20Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN5.154e-2739.20Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA5_SCHPO6.731e-2736.41Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA2_ORYSJ6.731e-2736.52Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI6.731e-2736.52Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSMA_HALWD8.791e-2739.31Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA7_CHICK8.791e-2740.37Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA5_ORYSJ8.791e-2738.12Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA2_RAT8.791e-2739.11Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE8.791e-2739.11Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32009G10EF RVDevelop1 Citrus clementina cDNA clone C32009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920548 ID=FC920548; Name=FC920548; organism=Citrus clementina; type=EST; length=722bp
CCGGGGGATCCGACGAGTAGAACTGCCTGAAGAAGAAAATTGAAAGAGAG
GAATCACAGTAGCGTATAATCAACAATGAGTAGAGGAAGTGGAGGAGGAT
ACGATCGCCATATTACAATTTTTTCGCCTGAGGGTCGTCTCTTTCAAGTC
GAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGGGTTACCTCTATCGGTGT
TCGAGGAAAGGATTCAGTCTGTGTTGTGACTCAGAAGAAGGTCCCGGACA
AGCTTTTGGATCATACAAGTGTCACACATCTTTTCCCAATCACAAAGTAC
CTTGGATTGCTGGCAACTGGAATGACAGCTGATGCAAGGACATTGGTTCA
GCAGGCAAGATATGAAGCCGCTGAGTTTCGCTTCAAATATGGATATGAAA
TGCCTGTGGATGTGTTAGCCAAATGGATTGCAGACAAATCACAAGTATAT
ACTCAACATGCTTATATGAGACCACTTGGTGTAGTTGCTATGGTTTTGAG
TATTGACGAAGAATGTGGACCTCGCCTCTTTAAGTGTGACCCTGCTGGCC
ATTTCTTTGGCCACAAGGCAACAAGTGCTGGATTGAAGGAGCAAGAGGCA
ATTAATTTCTTGGAGAAGAAGATGAAGAATGATCCTGCGTTTACCTTTCA
GAAACTGTGCAGACTGCAATTTCACCCTGCATCAGTCCTGCAGAAGATTT
TAGGCGAGTGAGATTGAGTTGG
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