FC920560

Overview
NameFC920560
Unique NameFC920560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/127 (46.46%), Postives = 90/127 (70.87%), Query Frame = 1 
Query:  274 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 654
            E   K HLN+V IGHVD+GKSTT G +++  G +D+RT+ K E++A + ++ S+  A+++D  + E+ +G T+      F+T +  +TI+DAPGHK ++ NMI+G SQAD  VL+I+A+KGEFE GF
Sbjct:    2 ERKEKDHLNLVVIGHVDSGKSTTTGHLIYKLGGIDERTLAKLEEKALELNKASFKYAFVLDNLKAEQERGITINCALRQFDTPSRSYTIIDAPGHKDFIKNMITGTSQADAAVLIIAAKKGEFEDGF 128
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
[Close]
BLAST of FC920560 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.229e-29
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:  277 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 651
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER +G T+++    FET     TI+DAPGH+ ++ NMI+G SQAD  VL+++A  GEFE G
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG 126
The following BLAST results are available for this feature:
BLAST of FC920560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A2_MOUSE1.229e-2947.20Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN1.229e-2947.20Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_EUPCR1.229e-2946.46Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A2_BOVIN1.229e-2947.20Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A1_RAT1.229e-2947.20Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT1.229e-2947.20Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB1.229e-2947.20Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]
EF1A1_PANTR1.229e-2947.20Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE1.229e-2947.20Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN1.229e-2947.20Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionC32010A01EF RVDevelop1 Citrus clementina cDNA clone C32010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920560 ID=FC920560; Name=FC920560; organism=Citrus clementina; type=EST; length=654bp
GGGGGAATAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTAT
GGATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGA
ATAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTG
GTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCC
TGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAG
ATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAGCGACACTTGAAT
GTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCA
GATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATG
AGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTATATT
ATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGTTGG
AAGAGCTCACTTTGAAACTGAGACTACTAGATTTACAATTTTGGATGCGC
CGGGTCACAAGAGTTATGTCCCTAATATGATTAGTGGGGCATCTCAAGCT
GATATTGGTGTACTGGTAATTTCTGCTCGAAAAGGAGAGTTTGAAACTGG
GTTT
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