FC920577

Overview
NameFC920577
Unique NameFC920577
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length349
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11919 contig Ccv1_Contig11919:332..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_MAIZE (Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 2 
Query:   53 EKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASH---LFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            EK  V VTGA+GF+G+W+V  LL+ GYT + A +    +      L  LPGAT+  + +++A++ +  +   AI GC GVFH+A+P      KD E E++ P
Sbjct:    9 EKGTVLVTGASGFVGSWLVMKLLQAGYT-VRATVRDPANVGKTKPLMDLPGATE-RLSIWKADLAEEGSFHDAIRGCTGVFHVATPMDFLS-KDPENEVIKP 107
[Close]
BLAST of FC920577 vs. ExPASy Swiss-Prot
Match: DFRA_HORVU (Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 2 
Query:   56 KEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASH---LFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPNTLDDPKDSEKELLIP 349
            K  V VTGA+GF+G+W+V  LL+ GYT + A +    +      L  LPGA K  + +++A++ ++ + + AI GC GVFH+A+P   D  +D E E++ P
Sbjct:    5 KGPVVVTGASGFVGSWLVMKLLQAGYT-VRATVRDPANVEKTKPLLELPGA-KERLSIWKADLSEDGSFNEAIAGCTGVFHVATPMDFDS-QDPENEVIKP 102
The following BLAST results are available for this feature:
BLAST of FC920577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DFRA_MAIZE6.880e-1239.22Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3... [more]
DFRA_HORVU1.174e-1138.61Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32010B12EF RVDevelop1 Citrus clementina cDNA clone C32010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920577 ID=FC920577; Name=FC920577; organism=Citrus clementina; type=EST; length=349bp
GGAACTTCACAAAATCGTCACATCATTAAAGAGAAAAAGGATGAACGGGC
CAGAAAAGGAAGTAGTTTGCGTGACTGGAGCCAACGGGTTCATCGGAACA
TGGGTGGTCCGAACCCTTCTAGAAAAAGGCTACACCAACATTCACGCTGC
CATCTTTCCCGGCACTGACGCATCCCACTTGTTCAGCCTCCCAGGCGCCA
CCAAGCTCAACGTCCGTGTTTACGAGGCCAATATCTTAGACAACGAAGCA
ATTTCCAGGGCCATCGAGGGTTGCAAGGGGGTCTTCCATCTTGCCTCTCC
TAACACCCTGGATGATCCCAAGGACTCCGAAAAGGAGCTGCTCATTCCT
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