FC920591

Overview
NameFC920591
Unique NameFC920591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.365e-64
Identity = 112/208 (53.85%), Postives = 156/208 (75.00%), Query Frame = 2
Query:   89 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTL 712
            M   K H+N+VVIGHVD GKST  GH++Y+LG +D++ I+  E+EA +  K SFK+AW+LDKL+ ERERG+TI +   KFET +Y  T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAG+S +GQTREHA+LA T+G+ Q+I   NKMDAT P +S+ RY++I   +  +LK +GY+   +PF+P+S + G+ +IERS  +
Sbjct:    1 MSSGKPHLNLVVIGHVDHGKSTLVGHILYRLGLVDQKTIQMLEEEAKKRGKESFKFAWLLDKLKEERERGVTIALTYMKFETRRYIFTIIDAPGHRDFVKNMITGASQADAALLVVSARKGEFEAGMSPEGQTREHAILAKTMGINQLIVAVNKMDATEPPWSQKRYEQIKTILGKFLKSLGYDISKVPFIPVSAWTGDNLIERSPNM 208          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.365e-64
Identity = 119/156 (76.28%), Postives = 137/156 (87.82%), Query Frame = 2
Query:  245 SFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTL 712
            SFKYAWVLDKL+AERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P +S+ RY+EI KEVSSY+KK+GYNP  + FVPISG+ G+ M+E S+ +
Sbjct:    2 SFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPFSENRYEEIKKEVSSYIKKIGYNPVAVAFVPISGWHGDNMLEPSSNM 157          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.972e-64
Identity = 122/186 (65.59%), Postives = 144/186 (77.42%), Query Frame = 2
Query:  149 STTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY-NPE*IPFVPISGFEGEYMIERS 703
            ST TGHLIYK GGID+R I+ +EK A EM K SFKYAWVLD+L+ ERERGITI+IALWKFET KY  T+IDAPGHRDFIKNMITGTSQAD A+L++ +  G FEAGISKDGQTREHA LA TLG+K MI C NKMD    KYSK RYDEI  E+   LK +G+   E   ++P SG+ G+ ++E+S
Sbjct:    1 STLTGHLIYKCGGIDQRTIDEYEKRATEMGKGSFKYAWVLDQLKDERERGITINIALWKFETKKYIVTIIDAPGHRDFIKNMITGTSQADVAILVVAAGQGEFEAGISKDGQTREHATLANTLGIKTMIICVNKMDDGQVKYSKERYDEIKGEMMKQLKNIGWKKAEEFDYIPTSGWTGDNIMEKS 186          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.188e-64
Identity = 111/205 (54.15%), Postives = 154/205 (75.12%), Query Frame = 2
Query:   98 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTL 712
            EK H+N+VVIGHVD GKST  GHL+Y+LG I+++ ++  E++A    K SFK+AW+LDK++ ERERGITID+   KFET KY  T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAG+S +GQTREH LLA T+G++Q+I   NKMDA    Y + RY+ +V  +  ++K +GY  + IPF+P+S ++G+ +IERS  +
Sbjct:    3 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNM 207          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.491e-63
Identity = 114/209 (54.55%), Postives = 156/209 (74.64%), Query Frame = 2
Query:   89 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTLT 715
            M ++K H+N+VVIGH+D GKST  G L+Y++G +D R+I+++E+EA +M + ++KYAWVLDKL+ ERE+GITID+  +KFET KY+ T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAGIS  GQTREH  LA T+GV Q++   NKMD  T  YSK RY+EI  ++   L+ VGY  + IPF+P S +EG  + +R+   T
Sbjct:    1 MSEKKPHLNLVVIGHIDHGKSTLMGRLLYEIGAVDPRLIQQYEEEAKKMGRETWKYAWVLDKLKEEREKGITIDLGFYKFETKKYFFTLIDAPGHRDFVKNMITGASQADVALLVVSAKEGEFEAGISPAGQTREHVFLAKTMGVDQLVVAINKMD--TVNYSKERYEEIKNQLIRLLRMVGYKVDEIPFIPTSAWEGVNVSKRTPEKT 207          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.238e-57
Identity = 104/205 (50.73%), Postives = 143/205 (69.76%), Query Frame = 2
Query:   89 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERS 703
            M   K H+N+  IGHVD GKST  G ++Y++G ID+ +IE++ KEAA   K +F++AWV+D L+ ERERG+TIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLGV Q+I   NKMDAT P Y + RY+E+ +EV   L+ VGY  + +PF+P+S + G+ +++ S
Sbjct:    1 MADTKPHLNLAFIGHVDHGKSTLVGRMMYEMGAIDEHIIEQYRKEAAAKGKATFEFAWVMDSLKEERERGVTIDIAHQRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLARTLGVNQLIVAINKMDATEPPYDEKRYNEVKEEVGKLLRMVGYKIDEVPFIPVSAYNGDNVVKHS 198          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.022e-57
Identity = 108/208 (51.92%), Postives = 147/208 (70.67%), Query Frame = 2
Query:   89 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTL 712
            M  +K H+N++ IGHVD GKST  G L+Y+ G I   +IE + KEA +  K +F++AWV+D+ + ERERG+TID+A  KFET KYY T+IDAPGHRDF+KNMITGTSQAD A+L+I +  G    G+ +  QTREHA LA TLGV QM+   NKMDAT+P YS+ RY+E+  +    L+ +G+    I FVPISG++G+ + + S  +
Sbjct:    1 MASQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISAREG---EGVME--QTREHAFLARTLGVPQMVVAINKMDATSPPYSEKRYNEVKADAEKLLRSIGFKD--ISFVPISGYKGDNVTKPSPNM 201          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.334e-56
Identity = 105/209 (50.24%), Postives = 150/209 (71.77%), Query Frame = 2
Query:   89 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTLT 715
            M  EK H+N+V+IGHVD GKST  G L+++ G I + +I+ ++KEA E  K +F++AWV+D+ + ERERG+TID+   KFET KYY T+IDAPGHRDF+KNMITGTSQAD AVL++ +  G    G+    QT+EHA LA TLGV Q+I   NKMDAT P YS+ R++E+  E++  L  +G+    +P +P+SG++G+ +++ S  L+
Sbjct:    1 MASEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKEAEEKGKATFEFAWVMDRFKEERERGVTIDLTHRKFETDKYYFTIIDAPGHRDFVKNMITGTSQADAAVLVVSAREG---EGVM--AQTKEHAFLARTLGVPQLIAVVNKMDATQPPYSEKRFNEVKDEITKLLTPIGFKN--VPIIPLSGYKGDNIMKPSPNLS 202          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.334e-56
Identity = 104/206 (50.49%), Postives = 148/206 (71.84%), Query Frame = 2
Query:   98 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKR-SFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTL 712
            +K H+N++V GH+D+GKSTT GH +  LG +D+R I +  +E+ +  K  +FKYAWV+D ++ ERERGITID+A  KFET KY+ T+IDAPGHRDFIKNMITG S+ADCA+L++ +  G  +  I+  GQ REHA L  TLGV Q+I   NKMD +  KYS+  Y + V++    +K VGY  E +PF+P+SG++G+ +++RS  +
Sbjct:    7 DKPHLNMIVTGHIDNGKSTTMGHFLMDLGVVDERTIAQHAEESEKTGKGDTFKYAWVMDNIKDERERGITIDLAFQKFETPKYFFTLIDAPGHRDFIKNMITGASEADCAILVLSAKEGETDTAIAAGGQAREHAFLLKTLGVNQLIVAVNKMDDS--KYSEEAYKKTVEKGEGLVKSVGYKLENVPFIPVSGWKGDNLVKRSENM 210          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.982e-56
Identity = 106/205 (51.71%), Postives = 143/205 (69.76%), Query Frame = 2
Query:   89 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERS 703
            M  EK HIN+ VIGH+D GKSTT G L+Y+ G +   +IE+++KEA    K SF +AWV+D L+ ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AV+++ +  G  E       QT+EH  L+ TLG+KQ+I   NKMDA    Y +AR++++  +V + LK VG NP+ + F+PIS FEG+ + + S
Sbjct:    1 MATEKPHINLAVIGHIDHGKSTTVGRLMYEAGAVPAHIIEQYKKEAESKGKGSFAFAWVMDNLKEERERGITIDIAHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVIVVAAPDGVME-------QTKEHVFLSKTLGIKQLIVAVNKMDAA--NYDEARFNQVKSDVGALLKMVGTNPDTVKFIPISAFEGDNITKNS 196          
The following BLAST results are available for this feature:
BLAST of FC920591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_STAMF1.365e-6453.85Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_RHYAM1.365e-6476.28Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_GIALA3.972e-6465.59Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_AERPE5.188e-6454.15Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_THEPD7.491e-6354.55Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_METTP1.238e-5750.73Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_THEAC8.022e-5751.92Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_PICTO2.334e-5650.24Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_CENSY2.334e-5650.49Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_METHJ3.982e-5651.71Elongation factor 1-alpha OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionC32010D09EF RVDevelop1 Citrus clementina cDNA clone C32010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920591 ID=FC920591; Name=FC920591; organism=Citrus clementina; type=EST; length=717bp
GAGCTCTCTCTGCCCTGACCAGTCTCTTTCTATCGCTTGCGGCTAGGGTT
TTAGCAGAGCTCTTTCAGTTTTAAGCAAATACTTTATCATGGGCAAGGAG
AAGGTTCATATCAATATTGTGGTTATTGGCCATGTCGACTCTGGGAAGTC
AACCACCACCGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTG
TGATTGAGCGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTC
AAGTACGCATGGGTGCTTGACAAGCTCGAGGCTGAGCGTGAGCGTGGTAT
CACCATTGATATTGCTTTGTGGAAGTTCGAGACCACGAAGTACTACTGCA
CTGTCATTGATGCCCCTGGACATCGTGACTTTATTAAGAACATGATTACT
GGTACTTCTCAGGCTGATTGTGCTGTCCTTATCATCGACTCCACCACTGG
TGGTTTTGAAGCTGGTATCTCTAAGGATGGGCAGACCAGAGAGCACGCTC
TACTTGCTTTCACCCTTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAG
ATGGATGCCACCACTCCCAAGTATTCAAAGGCAAGATATGATGAAATTGT
TAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGCTACAACCCAGAATAGA
TTCCATTTGTCCCAATCTCTGGATTTGAGGGTGAATACATGATTGAGAGG
TCCACAACCTTGACTGG
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