FC920591

Overview
NameFC920591
Unique NameFC920591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU1_MYXXD (Elongation factor Tu 1 OS=Myxococcus xanthus (strain DK 1622) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 64/195 (32.82%), Postives = 98/195 (50.26%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFE 679
            + K H+NI  IGHVD GK++ T  +                K  A+    +F    ++DK   ERERGITI  +  +++T+  +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + IP +P S  +
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDLIDKAPEERERGITISTSHVEYQTSNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDDIPIIPGSALK 177          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: CYSN_METPB (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=cysN PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 63/209 (30.14%), Postives = 107/209 (51.20%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTLT 715
            + K  +  +  G VD GKST  G L++    I    +   ++++ +   +  +   A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          QTR HALL   LG+ ++    NKMD     +S+ ++D I+    ++   + ++   +  +P+S   G+ ++   T  T
Sbjct:   20 QSKEVLRFITCGSVDDGKSTLIGRLLHDTKQIFDDQVTALQRDSRKHGTQGAEVDLALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADVAVILVDARHG-------LTRQTRRHALLVSLLGIHRVALAINKMDLV--GWSQDKFDAILSGFQAFAAPLNFSE--VRAIPLSAKNGDNVVLPGTAAT 217          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: CYSN_METC4 (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=cysN PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 62/209 (29.67%), Postives = 108/209 (51.67%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFK--YAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGEYMIERSTTLT 715
            + K  +  +  G VD GKST  G L++    I    +   ++++ +   +  +  +A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          Q+R HALL   LG++++    NKMD     +S+ +++ IV    ++   + +    +  +P+S   G+ ++   T  T
Sbjct:   20 QNKEVLRFITCGSVDDGKSTLIGRLLHDTKQIFDDQVTALQRDSRKHGTQGGEVDFALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADLAVILVDARHG-------LTRQSRRHALLVSLLGIRRVALAINKMDLV--GWSQDKFEAIVSGFQAFAAPLNFTE--VRAIPLSAKNGDNVVLPGTAAT 217          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STRPM (Elongation factor Tu OS=Streptococcus pyogenes serotype M28 GN=tuf PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STRPG (Elongation factor Tu OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STRPF (Elongation factor Tu OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=tuf PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STRPD (Elongation factor Tu OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=tuf PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STRPC (Elongation factor Tu OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=tuf PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STRP6 (Elongation factor Tu OS=Streptococcus pyogenes serotype M6 GN=tuf PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STRP3 (Elongation factor Tu OS=Streptococcus pyogenes serotype M3 GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
The following BLAST results are available for this feature:
BLAST of FC920591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_MYXXD7.094e-2132.82Elongation factor Tu 1 OS=Myxococcus xanthus (stra... [more]
CYSN_METPB7.094e-2130.14Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
CYSN_METC47.094e-2129.67Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
EFTU_STRPM9.264e-2141.56Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPG9.264e-2141.56Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPF9.264e-2141.56Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPD9.264e-2141.56Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPC9.264e-2141.56Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRP69.264e-2141.56Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRP39.264e-2141.56Elongation factor Tu OS=Streptococcus pyogenes ser... [more]

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Properties
Property NameValue
Genbank descriptionC32010D09EF RVDevelop1 Citrus clementina cDNA clone C32010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920591 ID=FC920591; Name=FC920591; organism=Citrus clementina; type=EST; length=717bp
GAGCTCTCTCTGCCCTGACCAGTCTCTTTCTATCGCTTGCGGCTAGGGTT
TTAGCAGAGCTCTTTCAGTTTTAAGCAAATACTTTATCATGGGCAAGGAG
AAGGTTCATATCAATATTGTGGTTATTGGCCATGTCGACTCTGGGAAGTC
AACCACCACCGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTG
TGATTGAGCGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTC
AAGTACGCATGGGTGCTTGACAAGCTCGAGGCTGAGCGTGAGCGTGGTAT
CACCATTGATATTGCTTTGTGGAAGTTCGAGACCACGAAGTACTACTGCA
CTGTCATTGATGCCCCTGGACATCGTGACTTTATTAAGAACATGATTACT
GGTACTTCTCAGGCTGATTGTGCTGTCCTTATCATCGACTCCACCACTGG
TGGTTTTGAAGCTGGTATCTCTAAGGATGGGCAGACCAGAGAGCACGCTC
TACTTGCTTTCACCCTTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAG
ATGGATGCCACCACTCCCAAGTATTCAAAGGCAAGATATGATGAAATTGT
TAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGCTACAACCCAGAATAGA
TTCCATTTGTCCCAATCTCTGGATTTGAGGGTGAATACATGATTGAGAGG
TCCACAACCTTGACTGG
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