FC920591

Overview
NameFC920591
Unique NameFC920591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STRP1 (Elongation factor Tu OS=Streptococcus pyogenes serotype M1 GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_STREM (Elongation factor Tu OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPE (Elongation factor Tu OS=Mycoplasma penetrans GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPE*IPFV 661
            + K H+NI  IGH+D GK+T T  +   L              A +   ++ KY  + DK   E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ ++ G          QTREH LLA  +GV +M+   NK D      S A   ++V+ EV   L   G++ +  P +
Sbjct:    8 RSKAHVNIGTIGHIDHGKTTLTAAICTYL--------------AKKGGAKAMKYDEI-DKAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMP-------QTREHILLARQVGVPKMVVFLNKCDMV----SDAEMQDLVEMEVRELLSSYGFDGDNTPVI 171          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLE (Elongation factor Tu OS=Mycobacterium leprae GN=tuf PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 63/156 (40.38%), Postives = 90/156 (57.69%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 559
            + K H+NI  IGHVD GK+T T         I K + ++F      +N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFPN----LNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDA 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLB (Elongation factor Tu OS=Mycobacterium leprae (strain Br4923) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 63/156 (40.38%), Postives = 90/156 (57.69%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 559
            + K H+NI  IGHVD GK+T T         I K + ++F      +N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFPN----LNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDA 142          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_LACLS (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 2
Query:   86 IMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKAD 139          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_LACLM (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 2
Query:   86 IMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKAD 139          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_LACLA (Elongation factor Tu OS=Lactococcus lactis subsp. lactis GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 2
Query:   86 IMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKAD 139          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP4 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 60/193 (31.09%), Postives = 98/193 (50.78%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISG 673
            + K H+NI  IGHVD GK+T T  +   L  + +    ++++               +D    E+ RGITI+ A  ++ETT+ +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D       +   + +  E+   L    ++ + IP +  SG
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAAARKYDE---------------IDAAPEEKARGITINTAHVEYETTQRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLAKQVGVPSIVVFLNKVDQLD---DEELLELVELELRELLTSYDFDGDNIPIIRGSG 175          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_CHLRE (Elongation factor Tu, chloroplastic OS=Chlamydomonas reinhardtii GN=tufA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 68/206 (33.01%), Postives = 100/206 (48.54%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEG-EYMIERSTT 709
            ++K H+NI  IGHVD GK+T T  +   L      V +++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  ++   NK D       K   + +  EV   L K  +  + IP VP S     E +IE   T
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAAGGSVGKKYDE---------------IDSAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNVVVFLNKEDQVD---DKELLELVELEVRETLDKYEFPGDEIPVVPGSALLALEALIENPKT 188          
The following BLAST results are available for this feature:
BLAST of FC920591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRP19.264e-2141.56Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STREM9.264e-2141.56Elongation factor Tu OS=Streptococcus equi subsp. ... [more]
EFTU_MYCPE9.264e-2134.21Elongation factor Tu OS=Mycoplasma penetrans GN=tu... [more]
EFTU_MYCLE9.264e-2140.38Elongation factor Tu OS=Mycobacterium leprae GN=tu... [more]
EFTU_MYCLB9.264e-2140.38Elongation factor Tu OS=Mycobacterium leprae (stra... [more]
EFTU_LACLS9.264e-2138.85Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLM9.264e-2138.85Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLA9.264e-2138.85Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_CYAP49.264e-2131.09Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CHLRE9.264e-2133.01Elongation factor Tu, chloroplastic OS=Chlamydomon... [more]

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Properties
Property NameValue
Genbank descriptionC32010D09EF RVDevelop1 Citrus clementina cDNA clone C32010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920591 ID=FC920591; Name=FC920591; organism=Citrus clementina; type=EST; length=717bp
GAGCTCTCTCTGCCCTGACCAGTCTCTTTCTATCGCTTGCGGCTAGGGTT
TTAGCAGAGCTCTTTCAGTTTTAAGCAAATACTTTATCATGGGCAAGGAG
AAGGTTCATATCAATATTGTGGTTATTGGCCATGTCGACTCTGGGAAGTC
AACCACCACCGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTG
TGATTGAGCGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTC
AAGTACGCATGGGTGCTTGACAAGCTCGAGGCTGAGCGTGAGCGTGGTAT
CACCATTGATATTGCTTTGTGGAAGTTCGAGACCACGAAGTACTACTGCA
CTGTCATTGATGCCCCTGGACATCGTGACTTTATTAAGAACATGATTACT
GGTACTTCTCAGGCTGATTGTGCTGTCCTTATCATCGACTCCACCACTGG
TGGTTTTGAAGCTGGTATCTCTAAGGATGGGCAGACCAGAGAGCACGCTC
TACTTGCTTTCACCCTTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAG
ATGGATGCCACCACTCCCAAGTATTCAAAGGCAAGATATGATGAAATTGT
TAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGCTACAACCCAGAATAGA
TTCCATTTGTCCCAATCTCTGGATTTGAGGGTGAATACATGATTGAGAGG
TCCACAACCTTGACTGG
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