FC920591

Overview
NameFC920591
Unique NameFC920591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_LACH4 (Elongation factor Tu OS=Lactobacillus helveticus (strain DPC 4571) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 70/189 (37.04%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFV 661
            + K H+NI  IGHVD GK+T T  +   L           EK  A+    S      +D    E+ERGITI+ A  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + IP V
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA----------EKGLAKAEDYS-----QIDAAPEEKERGITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVNYIVVFLNKCDLVD---DPELIDLVEMEVRDLLTEYDYPGDDIPVV 172          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_LACCB (Elongation factor Tu OS=Lactobacillus casei (strain BL23) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 70/189 (37.04%), Postives = 97/189 (51.32%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFV 661
            + K H+NI  IGHVD GK+T T         I K + E+   +A +       YA + D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + IP +
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLSEKGLAKAQD-------YASI-DAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DPELIDLVEMEVRELLSEYDYPGDDIPVI 172          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_LACC3 (Elongation factor Tu OS=Lactobacillus casei (strain ATCC 334) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 70/189 (37.04%), Postives = 97/189 (51.32%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFV 661
            + K H+NI  IGHVD GK+T T         I K + E+   +A +       YA + D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + IP +
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLSEKGLAKAQD-------YASI-DAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DPELIDLVEMEVRELLSEYDYPGDDIPVI 172          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_LACBA (Elongation factor Tu OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 70/189 (37.04%), Postives = 97/189 (51.32%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFV 661
            + K H+NI  IGH+D GK+T T         I K + ++   +A +       YA + D    ERERGITI+ A  ++ET K +   IDAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + IP +
Sbjct:    9 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLADKGLAKAED-------YADI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DDELVDLVEMEVRELLSEYDYPGDDIPVI 172          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_EXISA (Elongation factor Tu OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 2
Query:   89 MGKEKV-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 556
            MGKEK      H+N+  IGHVD GK+T T  +   L     +   +F++               +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GV  ++   NK+D
Sbjct:    1 MGKEKFDRSKPHVNVGTIGHVDHGKTTLTAAISAVLSKAQGKAATKFDQ---------------IDGAPEERERGITIATAHIEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMP-------QTREHILLSRQVGVPYIVVFMNKVD 139          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_CYAME (Elongation factor Tu, chloroplastic OS=Cyanidioschyzon merolae GN=tufA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 65/190 (34.21%), Postives = 95/190 (50.00%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFV 661
            + K H+NI  IGHVD GK+T T  +   L   D  V +++FE+               +D    ER RGITI+ +  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  + IPFV
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAISAVLASKDNTVQLKKFEE---------------IDSAPEERARGITINTSHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSIVVFLNKADMVD---DPELLELVELEVRELLSKYDFPGDTIPFV 172          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTE (Elongation factor Tu OS=Clostridium tetani GN=tufA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 2
Query:   95 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPE*IPFV 661
            + K H+NI  IGHVD GK+T T  +   LG       + F K        +FKY  + DK   E+ERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +   A   E+V+ EV   + + G+  +  P V
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTILGH------KGFAK--------AFKYDEI-DKAPEEKERGITISTSHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEHIVVFLNKAD----QVDDAELIELVEMEVRELMNEYGFPGDDAPVV 171          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_BORHD (Elongation factor Tu OS=Borrelia hermsii (strain DAH) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 58/178 (32.58%), Postives = 95/178 (53.37%), Query Frame = 2
Query:   86 IMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSY 619
            +  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+  +    E+++ V  Y
Sbjct:    5 VFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETAGRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPELVELVEVEVLELVEKY 161          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: EFTU_APPPP (Elongation factor Tu OS=Apple proliferation phytoplasma GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 68/197 (34.52%), Postives = 103/197 (52.28%), Query Frame = 2
Query:   74 SKYFIMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPE*IPFV 661
            SK F+  ++KVH+N+  IGHVD GK+T T  +   L            K  AE   +S+     +DK + E+ERGITI+     +ET K +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LLA  +G+ ++I   NK D       +  +  +V+ EV   L +  ++ +  PFV
Sbjct:    3 SKVFL--RDKVHVNVGTIGHVDHGKTTLTAAITKILS----------TKGLAE--NKSYDQ---IDKTKEEKERGITINTTHVSYETVKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHGVMP-------QTREHVLLAGQVGISKLIVFLNKCDLV----KEEEWIHLVEMEVRELLNEYKFDGDKTPFV 171          
BLAST of FC920591 vs. ExPASy Swiss-Prot
Match: CYSN_SODGM (Sulfate adenylyltransferase subunit 1 OS=Sodalis glossinidius (strain morsitans) GN=cysN PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 62/204 (30.39%), Postives = 104/204 (50.98%), Query Frame = 2
Query:   80 YFIMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLEAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPE*IPFVPISGFEGE 685
            Y    + K  +  +  G VD GKST  G L++    I +  +     ++  +  +  K   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+L+ID   G  +       QTR H+ ++  LG++ ++   NKMD     + +  +  I ++   + +++  + + I FVP+S  EG+
Sbjct:   18 YLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSTLHTDSKRLGTQGDKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDVAILLIDVRKGVLD-------QTRLHSFISTLLGIRHLVVAVNKMDLVA--FDEQIFQGIRQDYLRFAEQLPVDLD-ITFVPLSALEGD 211          
The following BLAST results are available for this feature:
BLAST of FC920591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LACH41.210e-2037.04Elongation factor Tu OS=Lactobacillus helveticus (... [more]
EFTU_LACCB1.210e-2037.04Elongation factor Tu OS=Lactobacillus casei (strai... [more]
EFTU_LACC31.210e-2037.04Elongation factor Tu OS=Lactobacillus casei (strai... [more]
EFTU_LACBA1.210e-2037.04Elongation factor Tu OS=Lactobacillus brevis (stra... [more]
EFTU_EXISA1.210e-2037.27Elongation factor Tu OS=Exiguobacterium sp. (strai... [more]
EFTU_CYAME1.210e-2034.21Elongation factor Tu, chloroplastic OS=Cyanidiosch... [more]
EFTU_CLOTE1.210e-2035.79Elongation factor Tu OS=Clostridium tetani GN=tufA... [more]
EFTU_BORHD1.210e-2032.58Elongation factor Tu OS=Borrelia hermsii (strain D... [more]
EFTU_APPPP1.210e-2034.52Elongation factor Tu OS=Apple proliferation phytop... [more]
CYSN_SODGM1.210e-2030.39Sulfate adenylyltransferase subunit 1 OS=Sodalis g... [more]

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Properties
Property NameValue
Genbank descriptionC32010D09EF RVDevelop1 Citrus clementina cDNA clone C32010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920591 ID=FC920591; Name=FC920591; organism=Citrus clementina; type=EST; length=717bp
GAGCTCTCTCTGCCCTGACCAGTCTCTTTCTATCGCTTGCGGCTAGGGTT
TTAGCAGAGCTCTTTCAGTTTTAAGCAAATACTTTATCATGGGCAAGGAG
AAGGTTCATATCAATATTGTGGTTATTGGCCATGTCGACTCTGGGAAGTC
AACCACCACCGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTG
TGATTGAGCGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTC
AAGTACGCATGGGTGCTTGACAAGCTCGAGGCTGAGCGTGAGCGTGGTAT
CACCATTGATATTGCTTTGTGGAAGTTCGAGACCACGAAGTACTACTGCA
CTGTCATTGATGCCCCTGGACATCGTGACTTTATTAAGAACATGATTACT
GGTACTTCTCAGGCTGATTGTGCTGTCCTTATCATCGACTCCACCACTGG
TGGTTTTGAAGCTGGTATCTCTAAGGATGGGCAGACCAGAGAGCACGCTC
TACTTGCTTTCACCCTTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAG
ATGGATGCCACCACTCCCAAGTATTCAAAGGCAAGATATGATGAAATTGT
TAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGCTACAACCCAGAATAGA
TTCCATTTGTCCCAATCTCTGGATTTGAGGGTGAATACATGATTGAGAGG
TCCACAACCTTGACTGG
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