FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 4.357e-64
Identity = 119/211 (56.40%), Postives = 156/211 (73.93%), Query Frame = 1
Query:  100 DDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEED-----GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D ++ +++  ++   ++LLDNEIR+ + ELQR + E +                  LPYLV N+VE+++MN  ++ E       G N++LD+   GK  V+KTS+RQT+FLP+VGLVDPDKLKP DLVGVNKDSYLILDTLPSE+DSRVKAMEVDEKPTE Y+D+GGL+KQI+ELVEAIVLPM   ++F+ +G+R PKG L+YGPPGTGKT
Sbjct:   19 DQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKT 229          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.656e-63
Identity = 120/205 (58.54%), Postives = 152/205 (74.15%), Query Frame = 1
Query:  103 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D++  MTAD++ R ++LL+NE +VL+ E    +LE+DS                 LP+LV N+VEI++M  + E +              KCVV+K STRQTIFL   G+VD DKL+PGDLVG+NKDSY+ILDTLP EYDSRVKAME+DEKPTE+Y+DIGGL+KQIQELVEA+VLPMTHKERF+ +G++PPKGVL+YGPPGTGKT
Sbjct:   24 DEIFQMTADEVNRKAKLLENETKVLRSEHISKHLEMDSIQKRIKENNDKLQVNTQLPHLVANVVEIIDMVLDGETQPS------------KCVVVKASTRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKT 216          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.688e-63
Identity = 117/206 (56.80%), Postives = 154/206 (74.76%), Query Frame = 1
Query:  100 DDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            + ++ +   D++   +RLL+N+I+V+K E QR   E  +                 LPYLVGN+VEIL+M P++   ++ AN + ++ R GK  V+KTSTRQTIFLP++GLV+P++L PGDL+GVNKDSYLI+D LPSEYDSRVKAMEVDEKPTE Y+DIGGL KQI+EL EAIVLPM   ++F+KLGV+PPKG L++GPPGTGKT
Sbjct:   28 EQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKT 233          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.011e-36
Identity = 81/192 (42.19%), Postives = 116/192 (60.42%), Query Frame = 1
Query:  148 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEV--DEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            R+L++E R+L+  +     ++ +                 LPYLVGN+VE+L+       E  G              V+  STR + +LP+ GL+   +L+PGDLV ++KD+ ++ + LP +YD +V  M +  D KP E Y DIGGLE+QI+EL EAIVL +TH ERF+KL ++PPKGVL+YGPPGTGKT
Sbjct:   26 RMLNSETRILQSRVNTIKHDISTKNASIAENMERIRLNKQLPYLVGNVVEVLD-------EHSG--------------VVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKT 196          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.796e-32
Identity = 81/214 (37.85%), Postives = 118/214 (55.14%), Query Frame = 1
Query:   82 EDPNLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXL--PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ NL++D L     +++   +R+ + E R+LK EL++  LE ++                    P +VG +V                  D   +RK   VV+K+ST  +  + V   V+PD L PG  V +N+ +  ++D LP   D R KAMEVDE+P   Y DIGGLEKQ+QE+ E + LP+ H E F+K+G+ PPKG+LLYGPPGTGKT
Sbjct:   30 DNSNLKNDLLK----EELQEKARIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVV------------------DKVGERK---VVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 218          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 71/187 (37.97%), Postives = 103/187 (55.08%), Query Frame = 1
Query:  157 DNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D EIR+LK++++    E  S                  PY+   ++E+++ N                      VV+K+ST   + + V   VD   LKPG +V +N     I+D LP  YD  VKAMEV+E+P   + D+GGLE+QI+E+ EA+VLP+ +   F++LG+ PPKGVLL+GPPGTGKT
Sbjct:   22 DVEIRILKDKVRSLTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNR---------------------VVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKT 187          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.571e-28
Identity = 75/193 (38.86%), Postives = 103/193 (53.37%), Query Frame = 1
Query:  139 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            R  + L+ E+ + ++E      EL                    P +VG + EIL+         DG             V++K+ST       V   VD ++L+PG  V +N+ S  ++D LPSE DSRV AMEVDE P   Y+DIGGL++QI+E+ E +  P+   E F+K+GV PPKGVLLYGPPGTGKT
Sbjct:   56 RRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILD---------DGR------------VIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKT 227          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  379 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQH 741
            VV+++S      + V   V+P  LK G    +N+ S  I++ LPS YDS+V  ME+ + PTE Y DIGGLEKQI E+ EA+ LPMT  + F+K+G+ PPKGVLLYGPPGTGKT     V H
Sbjct:   89 VVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAH 209          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.265e-27
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  379 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V++++S      +    L+DPD LKPG    +N+ S  I+D LP+ YD+++  ME+ E P E Y +IGGLE QI+E+ EA+ LP+T  + F+K+G+ PPKGVLLYGPPGTGKT
Sbjct:   89 VIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKT 201          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 74/213 (34.74%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   91 NLEDDQLSSMTADDIV----RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++E+  +     DD V    R  R L+ ++R L+ + +R   EL                    P   GN++E+L                 D +R     +++        + +   ++ DKLKPG  V +++ +  I++ LPSE D  V   EV E+P   YNDIGGLEKQ+QEL EAI LP+ H E F+++G+ PPKGVLLYGPPG GKT
Sbjct:    2 SIENTDVHPEGYDDYVTFLKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLRQP-------PAFAGNVIEVL-----------------DDER----AIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKT 186          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PRS6A_YEAST4.357e-6456.4026S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS6A_DICDI1.656e-6358.5426S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS6A_SCHPO3.688e-6356.8026S protease regulatory subunit 6A OS=Schizosaccha... [more]
PRS6A_ENCCU1.011e-3642.1926S protease regulatory subunit 6A OS=Encephalitoz... [more]
PSMR_METJA9.796e-3237.85Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_AERPE1.324e-2837.97Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PSMR_METKA6.571e-2838.86Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_METHJ4.259e-2751.24Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METMJ7.265e-2749.56Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_PYRKO6.150e-2634.74Proteasome-activating nucleotidase OS=Pyrococcus k... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
back to top