FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            K V++K        + V   +D + + P   V +  DSY +   LP++ D  V  M V++ P   Y  IGGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:   83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  283 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G + E+ E   E   + + +  DL + Q  G+ V  VLK  T +   +        VVG    +D  KLKPG  V ++  +  I+  LP E D  V  M  ++     Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKT
Sbjct:   24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKT 181          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  283 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G + E+ E   E   + + +  DL + Q  G+ V  VLK  T +   +        VVG    +D  KLKPG  V ++  +  I+  LP E D  V  M  ++     Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKT
Sbjct:   24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKT 181          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  283 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G + E+ E   E   + + +  DL + Q  G+ V  VLK  T +   +        VVG    +D  KLKPG  V ++  +  I+  LP E D  V  M  ++     Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKT
Sbjct:   24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKT 181          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  283 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G + E+ E   E   + + +  DL + Q  G+ V  VLK  T +   +        VVG    +D  KLKPG  V ++  +  I+  LP E D  V  M  ++     Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKT
Sbjct:   24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKT 181          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            +D + + P   V +  +SY +   LP++ D  V  M V++ P   Y  +GGL+KQI+E+ E I LP+ H E F  LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:  102 IDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 205          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 4.720e-18
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            K V++K        + V   ++   LK    V +  DSY++   L ++ D  V  M V++ P   Y+ +GGL KQI+E+ E I LP+ H E F+ LG+  PKGV+LYGPPGTGKT     V H+
Sbjct:   82 KKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  448 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            L+PG  V VN +S  ++  L  E D R + MEVD+ P   Y DIGGL+ Q++E+ E + LPM     F+ +G+ PP GVLL+GPPGTGKT
Sbjct:  109 LEPGSRVAVN-NSLSVVRQLDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKT 197          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++K S+     + V   VD  KLK G  V ++  +  I+  LP E D  V  M   E+    ++ IGGL +QI+EL E I LP+ + E FQ++G++PPKGVLLYGPPGTGKT
Sbjct:  118 IVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKT 229          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            VD + +     V +  +SY +   LP++ D  V  M V++ P   Y  +GGL+KQI+E+ E I LP+ H E F  LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:   99 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 202          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PRS8_BOVIN2.503e-1941.9426S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS10_SPETR2.503e-1939.8726S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE2.503e-1939.8726S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN2.503e-1939.8726S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN2.503e-1939.8726S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS8_DROME3.614e-1844.2326S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS8_YEAST4.720e-1839.5226S protease regulatory subunit 8 homolog OS=Sacch... [more]
PSMR2_HALSA1.794e-1748.89Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS10_YEAST1.794e-1744.6426S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PRS8_MANSE2.342e-1744.2326S protease regulatory subunit 8 OS=Manduca sexta... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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