FC920598
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19 Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1 Query: 373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744 K V++K + V +D + + P V + DSY + LP++ D V M V++ P Y IGGL+KQI+E+ E I LP+ H E F+ LG+ PKGVLLYGPPGTGKT V H+ Sbjct: 83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19 Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 1 Query: 283 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 G + E+ E E + + + DL + Q G+ V VLK T + + VVG +D KLKPG V ++ + I+ LP E D V M ++ Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKT Sbjct: 24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKT 181
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19 Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 1 Query: 283 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 G + E+ E E + + + DL + Q G+ V VLK T + + VVG +D KLKPG V ++ + I+ LP E D V M ++ Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKT Sbjct: 24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKT 181
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19 Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 1 Query: 283 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 G + E+ E E + + + DL + Q G+ V VLK T + + VVG +D KLKPG V ++ + I+ LP E D V M ++ Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKT Sbjct: 24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKT 181
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19 Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 1 Query: 283 GNIVEILEMNPEDEAEEDGANIDLDS-QRKGKCV--VLKTSTRQTIFLP-------VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 G + E+ E E + + + DL + Q G+ V VLK T + + VVG +D KLKPG V ++ + I+ LP E D V M ++ Y++IGGL +QI+EL E I LP+T+ E FQ++G+ PPKG LLYGPPGTGKT Sbjct: 24 GRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKT 181
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18 Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744 +D + + P V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+ E I LP+ H E F LG+ PKGVLLYGPPGTGKT V H+ Sbjct: 102 IDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 205
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4) HSP 1 Score: 91.6633 bits (226), Expect = 4.720e-18 Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1 Query: 373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744 K V++K + V ++ LK V + DSY++ L ++ D V M V++ P Y+ +GGL KQI+E+ E I LP+ H E F+ LG+ PKGV+LYGPPGTGKT V H+ Sbjct: 82 KKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17 Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1 Query: 448 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 L+PG V VN +S ++ L E D R + MEVD+ P Y DIGGL+ Q++E+ E + LPM F+ +G+ PP GVLL+GPPGTGKT Sbjct: 109 LEPGSRVAVN-NSLSVVRQLDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKT 197
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4) HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17 Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 1 Query: 382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++K S+ + V VD KLK G V ++ + I+ LP E D V M E+ ++ IGGL +QI+EL E I LP+ + E FQ++G++PPKGVLLYGPPGTGKT Sbjct: 118 IVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKT 229
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17 Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 1 Query: 433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744 VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+ E I LP+ H E F LG+ PKGVLLYGPPGTGKT V H+ Sbjct: 99 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 202 The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 145
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bpback to top |