FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  352 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            LD++R    +++K S+     +     VD +KL  G  V ++  +  I+  LP E D  V  M  ++     Y+ +GGL  QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKT
Sbjct:   70 LDNER----LIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 187          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  352 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            LD++R    +++K S+     +     VD +KL  G  V ++  +  I+  LP E D  V  M  ++     Y+ +GGL  QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKT
Sbjct:   70 LDNER----LIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 187          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  439 PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            P KL+PGD + V+  +    + +P    + V+ + ++E P   Y DIGGL +QI+++ +A+ LP  HKE +++  +RPPKGVLLYGPPG GKT
Sbjct:  211 PRKLRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKT 300          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  439 PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            P KL+PGD + V+  +    + +P    + V+ + ++E P   Y DIGGL +QI+++ +A+ LP  HKE +++  +RPPKGVLLYGPPG GKT
Sbjct:  211 PRKLRPGDSLLVDPKAGYAFERVPK---AEVEDLVLEEVPDVSYQDIGGLTRQIEQIRDAVELPFLHKELYREYALRPPKGVLLYGPPGCGKT 300          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  439 PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            P KL+PGD + V+  +    + +P    + V+ + ++E P   Y DIGGL +QI+++ +A+ LP  HKE +++  +RPPKGVLLYGPPG GKT
Sbjct:  211 PRKLRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKT 300          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ ++LK G  V ++  +  I+  LP E D  V  M  ++     Y+D+GGL +QI+EL E + LP+ + E F+++G+ PPKG LL+GPPGTGKT
Sbjct:  104 INKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKT 198          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.383e-16
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  352 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            LDS+R     ++K S+     +     VD   L  G  V ++  +  I+  LP E D  V  M +++     +  +GGL +QI+EL E I LP+ + E F ++G++PPKGVLLYGPPGTGKT
Sbjct:   63 LDSER----FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKT 180          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16
Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  445 KLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            KL+PGD + V+  +    + +P    + V+ + ++E P   Y+DIGGL +QI+++ +A+ LP  HK+ F +  +RPPKGVLLYGPPG GKT
Sbjct:  195 KLRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVHYDDIGGLGRQIEQIRDAVELPFLHKDLFHEYSLRPPKGVLLYGPPGCGKT 282          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  484 SYLILDTLPSEYD--SRVKAMEVDEKPTED---------YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            +++I  T PS     +R  A+E+ EKP E+         Y DIGGL+++++ + E I LP+ H E FQ+LG+ PPKGVLLYGPPGTGKT
Sbjct:  142 TFVITATRPSGVVVVTRNTAIELKEKPAEEVKRAVPDVTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKT 230          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.856e-14
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  448 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            L PG  V ++  +  IL  LP E D  +  M  +   +  Y +IGGL  QI+EL E + LP+   E F ++G++ PKGVLLYGPPGTGKT
Sbjct:   96 LVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKT 185          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PS10B_ARATH1.518e-1640.1626S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH1.518e-1640.1626S protease regulatory subunit 10B homolog A OS=A... [more]
MPA_MYCTU1.983e-1644.09Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCLE1.983e-1644.09Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
MPA_MYCBO1.983e-1644.09Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
PRS10_CAEEL2.590e-1642.11Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_SCHPO3.383e-1639.34Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
MPA_RHOER9.842e-1643.96Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
Y1297_ARCFU8.332e-1548.31Cell division cycle protein 48 homolog AF_1297 OS=... [more]
PRS10_DICDI1.856e-1445.5626S protease regulatory subunit S10B OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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