FC920598
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 352 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 LD++R +++K S+ + VD +KL G V ++ + I+ LP E D V M ++ Y+ +GGL QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKT Sbjct: 70 LDNER----LIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 187
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 352 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 LD++R +++K S+ + VD +KL G V ++ + I+ LP E D V M ++ Y+ +GGL QI+EL E+I LP+ + E F ++G++PPKGVLLYGPPGTGKT Sbjct: 70 LDNER----LIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 187
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16 Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 439 PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 P KL+PGD + V+ + + +P + V+ + ++E P Y DIGGL +QI+++ +A+ LP HKE +++ +RPPKGVLLYGPPG GKT Sbjct: 211 PRKLRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKT 300
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16 Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 439 PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 P KL+PGD + V+ + + +P + V+ + ++E P Y DIGGL +QI+++ +A+ LP HKE +++ +RPPKGVLLYGPPG GKT Sbjct: 211 PRKLRPGDSLLVDPKAGYAFERVPK---AEVEDLVLEEVPDVSYQDIGGLTRQIEQIRDAVELPFLHKELYREYALRPPKGVLLYGPPGCGKT 300
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16 Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 439 PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 P KL+PGD + V+ + + +P + V+ + ++E P Y DIGGL +QI+++ +A+ LP HKE +++ +RPPKGVLLYGPPG GKT Sbjct: 211 PRKLRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKT 300
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16 Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 1 Query: 433 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++ ++LK G V ++ + I+ LP E D V M ++ Y+D+GGL +QI+EL E + LP+ + E F+++G+ PPKG LL+GPPGTGKT Sbjct: 104 INKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKT 198
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.383e-16 Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1 Query: 352 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 LDS+R ++K S+ + VD L G V ++ + I+ LP E D V M +++ + +GGL +QI+EL E I LP+ + E F ++G++PPKGVLLYGPPGTGKT Sbjct: 63 LDSER----FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKT 180
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16 Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 445 KLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 KL+PGD + V+ + + +P + V+ + ++E P Y+DIGGL +QI+++ +A+ LP HK+ F + +RPPKGVLLYGPPG GKT Sbjct: 195 KLRPGDSLLVDTKAGYAFERIPK---AEVEDLVLEEVPDVHYDDIGGLGRQIEQIRDAVELPFLHKDLFHEYSLRPPKGVLLYGPPGCGKT 282
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15 Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1 Query: 484 SYLILDTLPSEYD--SRVKAMEVDEKPTED---------YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 +++I T PS +R A+E+ EKP E+ Y DIGGL+++++ + E I LP+ H E FQ+LG+ PPKGVLLYGPPGTGKT Sbjct: 142 TFVITATRPSGVVVVTRNTAIELKEKPAEEVKRAVPDVTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKT 230
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.856e-14 Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1 Query: 448 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 L PG V ++ + IL LP E D + M + + Y +IGGL QI+EL E + LP+ E F ++G++ PKGVLLYGPPGTGKT Sbjct: 96 LVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKT 185 The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 145
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bpback to top |