FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.203e-13
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  487 YLILDTLPSEYDSRV---KAMEVDEKPTED---------YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            + ++ TLPS+    +     +E+ E+P  +         Y DIGGL +Q+ ++ E I LP+ H E F++LG+ PPKGV+LYGPPGTGKT
Sbjct:  150 FKVVKTLPSKVPVEIGEETKIEIREEPASEVLEEVSRISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKT 238          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  505 LPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            L  E  S +K  +V   P   Y DIGGL+++++++ E I LPM H E F+KLG+ PPKGVLL GPPGTGKT
Sbjct:  160 LKEEPVSEIKETKV---PDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKT 227          

HSP 2 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  550 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            E P   + DIGGLE+  QEL EA+  P+  KE F+K+GVRPPKGVLL+GPPGTGKT
Sbjct:  445 EVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKT 500          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEYDSRVKAMEV----------DEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GDL     G+    + +++T P+EY       E+          DE+  +D  Y+D+GG+ KQ+ ++ E + LP+ H + F+ +GV+PPKG+LLYGPPG+GKT
Sbjct:  150 VRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 255          

HSP 2 Score: 69.707 bits (169), Expect = 1.921e-11
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  544 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V E P   +NDIGGLE   +EL E +  P+ H E+F+K G+ P KGVL YGPPG GKT
Sbjct:  471 VVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 528          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  568 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            Y DIGGLE +IQ + E + LPM H + FQKLG+ PP+GVLL+GPPGTGKT
Sbjct:  188 YEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKT 237          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  364 RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            RKG   +++   R   F  V       +  PG+   V  D+ +  +  P + +   +  EV       Y+D+GG+ KQ+ ++ E + LP+ H + F+ +GV+PPKG+LLYGPPG+GKT
Sbjct:  152 RKGDLFLVRGGMRSVEFKVV-------ETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVG------YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 256          

HSP 2 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  544 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V E P   + DIGGLE   +EL E +  P+ H E+F+K G+ P KGVL YGPPG GKT
Sbjct:  472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 529          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEYDSRVKAMEV----------DEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GDL     G+    + +++T P+EY       E+          DE+  ++  Y+D+GG+ KQ+ ++ E + LP+ H + F+ +GV+PPKG+LLYGPPG+GKT
Sbjct:  150 VRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 255          

HSP 2 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  544 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V E P   + DIGGLE   +EL E +  P+ H E+F+K G+ P KGVL YGPPG GKT
Sbjct:  471 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 528          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEYDSRVKAMEV----------DEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GDL     G+    + +++T P+EY       E+          DE+  ++  Y+D+GG+ KQ+ ++ E + LP+ H + F+ +GV+PPKG+LLYGPPG+GKT
Sbjct:  151 VRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 256          

HSP 2 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  544 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            V E P   + DIGGLE   +EL E +  P+ H E+F+K G+ P KGVL YGPPG GKT
Sbjct:  472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 529          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CDC48_EMENI (Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.798e-13
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  460 DLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHNKC 750
            D +GV  +++     L     S ++ + V E P   + DIGGLE+  +EL+E++  P+ H E+FQK G+ P +GVL YGPPGTGKT  L     N+C
Sbjct:  468 DSLGVTMENFRY--ALGVSNPSALREVAVVEVPNVRWEDIGGLEEVKRELIESVQYPVDHPEKFQKFGLSPSRGVLFYGPPGTGKT-MLAKAVANEC 561          

HSP 2 Score: 69.707 bits (169), Expect = 1.921e-11
Identity = 26/50 (52.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  568 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            Y+DIGG  KQ+ ++ E + LP+ H + F+ +G++PP+G+L+YGPPGTGKT
Sbjct:  228 YDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKT 277          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  469 GVNKDSYLILDTLPSEYDSRVKAMEV----------DEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G+    + +++T P EY       E+          DE+  ++  Y+D+GG+ KQ+ ++ E + LP+ H + F+ +GV+PPKG+LLYGPPG+GKT
Sbjct:  162 GMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 256          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12
Identity = 38/107 (35.51%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GD+     G+    + +++T PS Y               +K  + +E   E  Y+DIGG+ KQ+ ++ E + LP+ H   F+ +GV+PP+G+LLYGPPGTGKT
Sbjct:  146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
VAT_THEAC1.203e-1342.70VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
Y1156_METJA2.052e-1353.52Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
CD48A_ARATH2.052e-1336.79Cell division control protein 48 homolog A OS=Arab... [more]
CDCH_HALSA3.500e-1366.00Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
CDC48_SOYBN5.971e-1333.90Cell division cycle protein 48 homolog OS=Glycine ... [more]
CD48E_ARATH5.971e-1335.85Cell division control protein 48 homolog E OS=Arab... [more]
CD48D_ARATH5.971e-1335.85Cell division control protein 48 homolog D OS=Arab... [more]
CDC48_EMENI7.798e-1341.24Cell division control protein 48 OS=Emericella nid... [more]
CDC48_CAPAN1.330e-1236.84Cell division cycle protein 48 homolog OS=Capsicum... [more]
TERA_DANRE2.963e-1235.51Transitional endoplasmic reticulum ATPase OS=Danio... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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