FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  550 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            E P   ++DIGG E+  Q+L E++  P+TH E F +LGVRPPKGVLLYGPPG  KT
Sbjct:  541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKT 596          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  364 RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLP-SEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            RKG   V++ S RQ  F  V        + P +   V++D+ +  +  P +  D      EV       Y+DIGG  +Q+ ++ E + LP+ H + F+ +G++PP+G+L+YGPPGTGKT
Sbjct:  167 RKGDLFVVRGSMRQVEFKVV-------DVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVG------YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKT 272          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GD+     G+    + +++T PS Y               +K  + +E   E  Y+DIGG  KQ+ ++ E + LP+ H   F+ +GV+PP+G+LLYGPPGTGKT
Sbjct:  146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GD+     G+    + +++T PS Y               +K  + +E   E  Y+DIGG  KQ+ ++ E + LP+ H   F+ +GV+PP+G+LLYGPPGTGKT
Sbjct:  146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GD+     G+    + +++T PS Y               +K  + +E   E  Y+DIGG  KQ+ ++ E + LP+ H   F+ +GV+PP+G+LLYGPPGTGKT
Sbjct:  146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GD+     G+    + +++T PS Y               +K  + +E   E  Y+DIGG  KQ+ ++ E + LP+ H   F+ +GV+PP+G+LLYGPPGTGKT
Sbjct:  146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GD+     G+    + +++T PS Y               +K  + +E   E  Y+DIGG  KQ+ ++ E + LP+ H   F+ +GV+PP+G+LLYGPPGTGKT
Sbjct:  146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GD+     G+    + +++T PS Y               +K  + +E   E  Y+DIGG  KQ+ ++ E + LP+ H   F+ +GV+PP+G+LLYGPPGTGKT
Sbjct:  146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ GD+     G+    + +++T PS Y               +K  + +E   E  Y+DIGG  KQ+ ++ E + LP+ H   F+ +GV+PP+G+LLYGPPGTGKT
Sbjct:  146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  499 DTLPSEYDSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            DT+       +K  E +E   E  Y+D+GG+ KQ+ ++ E + LP+ H + F+ +GV+PP+G+LL+GPPGTGKT
Sbjct:  184 DTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKT 257          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
AFG2_SCHPO2.963e-1258.93ATPase family gene 2 protein OS=Schizosaccharomyce... [more]
CDC48_SCHPO3.870e-1234.45Cell division cycle protein 48 OS=Schizosaccharomy... [more]
TERA_XENTR5.055e-1235.51Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_XENLA5.055e-1235.51Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_RAT5.055e-1235.51Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG5.055e-1235.51Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE5.055e-1235.51Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN5.055e-1235.51Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_BOVIN5.055e-1235.51Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
TERA2_CAEEL6.601e-1243.24Transitional endoplasmic reticulum ATPase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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