FC920598
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12 Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 Query: 550 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 E P ++DIGG E+ Q+L E++ P+TH E F +LGVRPPKGVLLYGPPG KT Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKT 596
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12 Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 1 Query: 364 RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLP-SEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 RKG V++ S RQ F V + P + V++D+ + + P + D EV Y+DIGG +Q+ ++ E + LP+ H + F+ +G++PP+G+L+YGPPGTGKT Sbjct: 167 RKGDLFVVRGSMRQVEFKVV-------DVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVG------YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKT 272
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12 Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++ GD+ G+ + +++T PS Y +K + +E E Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKT Sbjct: 146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12 Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++ GD+ G+ + +++T PS Y +K + +E E Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKT Sbjct: 146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12 Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++ GD+ G+ + +++T PS Y +K + +E E Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKT Sbjct: 146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5) HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12 Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++ GD+ G+ + +++T PS Y +K + +E E Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKT Sbjct: 146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4) HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12 Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++ GD+ G+ + +++T PS Y +K + +E E Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKT Sbjct: 146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4) HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12 Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++ GD+ G+ + +++T PS Y +K + +E E Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKT Sbjct: 146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12 Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 448 LKPGDLV----GVNKDSYLILDTLPSEY------------DSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 ++ GD+ G+ + +++T PS Y +K + +E E Y+DIGG KQ+ ++ E + LP+ H F+ +GV+PP+G+LLYGPPGTGKT Sbjct: 146 IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12 Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 1 Query: 499 DTLPSEYDSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717 DT+ +K E +E E Y+D+GG+ KQ+ ++ E + LP+ H + F+ +GV+PP+G+LL+GPPGTGKT Sbjct: 184 DTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKT 257 The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 145
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bpback to top |