FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  493 ILDTLPSEYDSRVKA--MEVDEKPTED---------YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            +++T PS Y     +  +E+ E+P ++         + DIG LE+  Q++ E +  PM H E FQ+LG+ PPKG+LLYGPPGTGKT
Sbjct:  175 VVNTQPSNYVYVTGSTNIEIREEPVKESSLAYPKVSWEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKT 260          

HSP 2 Score: 69.707 bits (169), Expect = 1.921e-11
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  496 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            L+ L S   S ++ + V E P  ++NDIGGL+   Q+L EA+  P+   E F K GV PPKG+LL+GPPGTGKT
Sbjct:  463 LNALKSIQPSLLREVYV-EVPKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKT 535          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  499 DTLPSEYDSRVKAMEVDEKPTE-DYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            DT+       +K  E +E   +  Y+D+GG+ KQ+ ++ E + LP+ H + F+ +G++PP+G+LL+GPPGTGKT
Sbjct:  185 DTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKT 258          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  364 RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            RKG   V++   RQ  F  V        ++P +   V +D+ +  +  P   +     M         Y+DIGG  KQ+ ++ E + LP+ H + F+ +G++PP+GVL+YGPPGTGKT
Sbjct:  157 RKGDHFVVRGGMRQVEFKVV-------DVEPEEYAVVAQDTIIHWEGEPINREDEENNMN-----EVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKT 262          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.921e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  568 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            Y+DIGG  KQ+ ++ E + LP+ H   F+ +GV+PP+G+L+YGPPGTGKT
Sbjct:  200 YDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKT 249          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: CDC48_ENCCU (Cell division control protein 48 OS=Encephalitozoon cuniculi GN=CDC48 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.921e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  568 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            Y+D+GG   Q+ ++ E + LP+ H + + K+GV+PPKG+LLYGPPGTGKT
Sbjct:  207 YDDVGGCRAQMAKIRELVELPLRHSQLYSKIGVKPPKGILLYGPPGTGKT 256          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
SAV_SULAC6.601e-1243.02Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
TERA1_CAEEL8.622e-1240.54Transitional endoplasmic reticulum ATPase homolog ... [more]
CDC48_YEAST8.622e-1233.90Cell division control protein 48 OS=Saccharomyces ... [more]
TERA_DROME1.921e-1154.00Transitional endoplasmic reticulum ATPase TER94 OS... [more]
CDC48_ENCCU1.921e-1154.00Cell division control protein 48 OS=Encephalitozoo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
back to top