FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  337 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G  +D  ++RK    V+K+ST     + +   VDPD + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKT
Sbjct:   73 GTILDRVNERKA---VVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKT 196          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 57/127 (44.88%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  337 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKT
Sbjct:   73 GTILDKVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKT 196          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 57/127 (44.88%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  337 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKT
Sbjct:   73 GTILDKVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKT 196          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 57/127 (44.88%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  337 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+ PPKGVLLYGPPGTGKT
Sbjct:   73 GTILDRVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKT 196          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.206e-25
Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  148 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            R L+ ++R L+ + +R   EL                    P   G ++E+L+   ED A                  +++        + +   ++ + LKPG  V +++ +  I++ LPSE D  V   EV E+PT  YNDIGGL+KQ+QEL EAI LP+ H E F+K+G+ PPKGVLLYGPPG GKT
Sbjct:   26 RQLELQVRTLEADKERLERELSRLRMEMSRLRQP-------PAFAGTLIELLD---EDRA------------------IVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKT 187          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.206e-25
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  379 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQH 741
            V +K++T     +     +D  +L+PG  V +N+ ++ I+D LPSE D  V  MEV+EKP   Y  IGGLE+Q++E+ E + LP+   E F+K+G+ PPKGVLLYGPPGTGKT     V H
Sbjct:   87 VAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAH 207          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 68/238 (28.57%), Postives = 115/238 (48.32%), Query Frame = 1
Query:   64 MATAMVEDPNLEDD-----------QLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            MATAMV DP   +             + S   DD+    + L  ++  ++ + +    EL +                 +P ++G  +E+++ N                       ++ ++T    ++ ++  ++ + LKP   VG+++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGKT     V H+
Sbjct:    1 MATAMVLDPKPAEKLPATRPETSITDVPSDGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNN---------------------AIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 217          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.881e-25
Identity = 66/187 (35.29%), Postives = 100/187 (53.48%), Query Frame = 1
Query:  157 DNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D  +R+L+E+++    EL+                   PY+   +++IL          DG             V++++S+   + + V   +D  KLKPG LV + +    I++ LP   D+ VK+ EV EKP   Y+DIGGL +QI E+ E I LP+ + E F+++G+ PPKGVLLYGPPGTGKT
Sbjct:   17 DPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILP---------DGK------------VIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 70/205 (34.15%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  103 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 70/205 (34.15%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  103 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV PPKGVLLYGPPGTGKT
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKT 182          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PSMR_METM51.370e-2545.67Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METMP3.986e-2544.88Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM73.986e-2544.88Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM63.986e-2544.88Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_THEON5.206e-2535.79Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METTH5.206e-2546.28Proteasome-activating nucleotidase OS=Methanobacte... [more]
PRS6B_SOLTU6.800e-2528.5726S protease regulatory subunit 6B homolog OS=Sola... [more]
PSMR_SULTO8.881e-2535.29Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_SULIY1.515e-2434.15Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.515e-2434.15Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
back to top