FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  316 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            E++AEED + +D           L+        ++ +S     ++ ++  VD D+L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGLE QIQE+ EA+ LP+TH E ++ +G++PPKGV+LYG PGTGKT
Sbjct:   92 EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKT 236          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  316 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            E++AEED + +D           L+        ++ +S     ++ ++  VD D+L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGLE QIQE+ EA+ LP+TH E ++ +G++PPKGV+LYG PGTGKT
Sbjct:   92 EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKT 236          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  316 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ED+ EED + +D           L+        ++ +S     ++ ++  VD D+L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGL+ QIQE+ EA+ LP+TH E ++ +G+RPPKGV+LYG PGTGKT
Sbjct:   97 EDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKT 241          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 55/150 (36.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  304 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M++++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G++PPKGV+LYGPPGTGKT
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 233          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.731e-23
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ + T    ++ ++  VD + L+PG  V ++  +  I+  L  + D  V  M++D+ PTE Y+DIGGLE QIQE+ E++ LP+TH E ++++G++PPKGV+LYG PGTGKT
Sbjct:  119 IVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT 230          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.731e-23
Identity = 52/145 (35.86%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  316 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            E+  EE+ A +D           L+     +  ++ T+     ++ ++  VD ++L+PG  V +N  ++ ++  L  + D  V  M++++ P E Y D+GGL++QIQE+ EA+ LP+TH E ++++G+RPPKGV+LYG PGTGKT
Sbjct:   92 EERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKT 236          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 65/198 (32.83%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  148 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQH 741
            R L+N+    + E+++   ELD                   P ++G +++++                     K   +++++S      + V   +D  KL PG  V +N+ +  I + +PS  +  V AMEV E    DY+ IGGL++QIQEL EA+ LP+T  ERF ++G+ PPKGVLLYG PGTGKT     V H
Sbjct:   53 RYLENQKIKYEREIRKLQSELDRMKTS--------------PLIIGTVIDVI---------------------KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAH 215          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  271 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            P  VGN+ EI++ N                       ++ ++     ++ ++  VD  KL  G  V +N  +  ++  +  E D  V  M+V++ PTE Y+DIGGLE Q+QE+ EAI LP+TH E ++++G++PPKGV+LYG PGTGKT
Sbjct:  105 PLTVGNLEEIIDDNH---------------------AIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKT 232          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = 1
Query:  352 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            LD    GK +++K+ST     +     ++  ++ PG  V +N+ S  +++ LP+  D  V  MEV + P  DY  IGGLE QI EL E + LP+   E FQK+G+ PPKGVLLYGPPGTGKT
Sbjct:   87 LDVMANGK-MIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKT 207          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.086e-22
Identity = 48/102 (47.06%), Postives = 72/102 (70.59%), Query Frame = 1
Query:  412 FLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ ++  VD D L+PG  V ++  +  I+  L  + D  +  M++D+ PTE Y DIGGLE QIQE+ EA+ LP+TH E ++++G++PPKGV+LYG PGTGKT
Sbjct:  138 YVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT 239          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PRS4B_ARATH1.675e-2337.9326S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH1.675e-2337.9326S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS4_ORYSJ2.187e-2337.9326S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4_CHICK2.187e-2336.6726S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_YEAST3.731e-2342.8626S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_CAEEL3.731e-2335.86Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PSMR_METMA6.364e-2332.83Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS4_DICDI6.364e-2336.9126S protease regulatory subunit 4 homolog OS=Dicty... [more]
PSMR_UNCMA1.086e-2245.08Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS4_SCHPO1.086e-2247.0626S protease regulatory subunit 4 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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