FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:27..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22
Identity = 50/127 (39.37%), Postives = 81/127 (63.78%), Query Frame = 1
Query:  337 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            G  +++  Q  G   ++ ++T    ++ ++  ++ + LKP   V +++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGKT
Sbjct:   80 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT 203          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  421 VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKT
Sbjct:  115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT 216          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  421 VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKT
Sbjct:  114 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT 215          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  421 VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKT
Sbjct:  115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT 216          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 1
Query:  421 VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKT
Sbjct:  115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT 216          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.159e-22
Identity = 64/198 (32.32%), Postives = 98/198 (49.49%), Query Frame = 1
Query:  148 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQH 741
            R L+N+    + E+++   ELD                   P ++G +++++                     K   +++++S      + V   +D  KL PG  V +N+ +  I + +PS  +  V AMEV E    DY+ IGGL++QIQEL EA+ LP+   ERF ++G+ PPKGVLLYG PGTGKT     V H
Sbjct:   53 RYLENQKIKYEREIRKLQSELDRMKTS--------------PLIIGTVIDVI---------------------KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAH 215          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 48/112 (42.86%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++ T      ++ ++  VD D L+PG  V +N     ++  L  E D  V  M++++ P+E Y DIGGLE+QIQE+ E++ LP+T+ E +Q++G++PPKGV+LYG PGTGKT
Sbjct:  106 IITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNYKDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKT 217          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.037e-22
Identity = 47/112 (41.96%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++++ST     + ++  +D +KLKP   V +++ S  ++D LP E DS +  +  +EKP   Y D+GGL+ Q QE+ EA+ LP+T  + ++++G+ PP+GVLLYGPPGTGKT
Sbjct:  103 IVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKT 214          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  271 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVD---PDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            P LV    +I+  N ED      A   +D ++ GK VV              GL D   P  ++ G  VGV++  Y I   LP + D  V  M V+EKP   Y+DIGG ++QI+++ E + LPM H E+F +LG+ PPKGVL YGPPG+GKT
Sbjct:  122 PLLVATCTQIISPNTED------AKYVVDIKKIGKYVV--------------GLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKT 253          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  382 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            ++ ++T    ++ ++  +D + LKP   V ++K S  ++D LP E DS +  +  D+KP   Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ PP+GVL+YGPPG GKT     V H+
Sbjct:  102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHH 222          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PRS6B_ARATH1.418e-2239.3726S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS7_SPIOL2.418e-2251.9626S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_PRUPE2.418e-2251.9626S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_ORYSJ2.418e-2251.9626S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7A_ARATH2.418e-2251.9626S protease regulatory subunit 7 homolog A OS=Ara... [more]
PSMR_METAC3.159e-2232.32Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS4_ENCCU5.388e-2242.8626S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS6B_ASPNG7.037e-2241.9626S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS7B_ARATH1.568e-2140.7926S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS6B_RAT1.568e-2139.6726S protease regulatory subunit 6B OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
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