FC920598

Overview
NameFC920598
Unique NameFC920598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:27..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  442 DKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            D L+ GD V +N DS+ +   L  E D+R +AMEVDE P+  Y DIGGL+ Q++E+ EA+  P+ + E+F  +GV PP GVLL+GPPGTGKT
Sbjct:  110 DTLEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKT 200          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  421 VVGL---VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            VVGL   V P  ++ G  VGV++  Y I   LP   D  V  M V+EKP   Y+D+GG + QI++L E + LP+   ERF  LG+ PPKG+LLYGPPGTGKT
Sbjct:  156 VVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKT 257          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  421 VVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT 717
            ++  VD + LKP   V +++ S  I+  LP E DS +  M   EKP+  Y D+GGL+ Q QE+ E + LP+   + ++++G+ PP+GVLLYGPPGTGKT
Sbjct:   84 ILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKT 182          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  379 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            V++K +      + +   VD  KL P     +  +SY +   LP++ D  V  M+V++ P   Y+ +GGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:   81 VLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 202          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            K V++K        + V   +D + + P   V +  DSY +   LP++ D  V  M V++ P   Y  IGGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:   78 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 201          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            K V++K S      + +   ++   L PG  V +  DSY +   LP++ D  V  M+V++ P   Y  +GGL++QI+E+ E I LP+ H E F+ LG+  PKGV++YGPPGTGKT     V H+
Sbjct:   90 KKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAHH 213          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            K V++K        + V   +D + + P   V +  DSY +   LP++ D  V  M V++ P   Y  IGGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:   83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            K V++K        + V   +D + + P   V +  DSY +   LP++ D  V  M V++ P   Y  IGGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:   83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            K V++K        + V   +D + + P   V +  DSY +   LP++ D  V  M V++ P   Y  IGGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:   83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206          
BLAST of FC920598 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.503e-19
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  373 KCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKT*WLVLVQHN 744
            K V++K        + V   +D + + P   V +  DSY +   LP++ D  V  M V++ P   Y  IGGL+KQI+E+ E I LP+ H E F+ LG+  PKGVLLYGPPGTGKT     V H+
Sbjct:   83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206          
The following BLAST results are available for this feature:
BLAST of FC920598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PSMR1_HALSA3.861e-2052.17Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS7_YEAST5.043e-2050.0026S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS6B_ENCCU8.602e-2044.4426S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS8_DICDI1.123e-1940.9826S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS8_XENLA1.467e-1941.9426S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_NAEFO1.467e-1939.5226S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS8_RAT2.503e-1941.9426S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG2.503e-1941.9426S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE2.503e-1941.9426S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN2.503e-1941.9426S protease regulatory subunit 8 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010E07EF RVDevelop1 Citrus clementina cDNA clone C32010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920598 ID=FC920598; Name=FC920598; organism=Citrus clementina; type=EST; length=750bp
GGAGCCACACTCTTGTCTCTCTTTTATTTTCTCGGTGCAAATTTTGTGTG
AAAAAATAATCATATGGCGACGGCGATGGTGGAAGATCCCAACTTGGAAG
ACGATCAACTGTCTTCCATGACGGCCGATGATATTGTTCGGGCGTCGCGG
CTACTCGACAACGAGATTCGTGTCCTAAAGGAAGAATTACAAAGAACAAA
TCTTGAGTTAGATTCGTTCAAGGAGAAGATTAAGGAGAATCAAGAGAAGA
TTAAACTCAATAAGCAGCTTCCTTACTTGGTGGGCAACATCGTTGAGATT
TTGGAGATGAACCCGGAGGATGAGGCTGAGGAAGATGGTGCTAACATTGA
TCTTGACTCGCAAAGGAAGGGTAAATGTGTAGTGTTGAAGACTTCTACTC
GTCAGACCATCTTTCTTCCAGTAGTCGGGCTTGTTGATCCTGATAAGTTG
AAACCCGGTGATCTGGTTGGAGTTAATAAGGATAGTTACTTGATCCTGGA
CACACTGCCTTCTGAGTATGATTCTCGGGTGAAGGCAATGGAAGTTGATG
AGAAACCTACTGAAGATTATAATGACATTGGAGGGTTGGAGAAGCAGATA
CAAGAACTTGTTGAGGCTATTGTGCTGCCAATGACACACAAAGAGCGTTT
CCAGAAGTTGGGGGTTCGTCCACCTAAGGGAGTGCTTCTATATGGACCTC
CCGGTACTGGGAAGACGTGATGGCTCGTGCTTGTGCAGCACAACAAATGC
back to top