FC920600

Overview
NameFC920600
Unique NameFC920600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:5..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_NEIM0 (Chaperone protein dnaK OS=Neisseria meningitidis serogroup C (strain 053442) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +  VIGIDLGTT SC+ + +NG  ++I N +G R TPS +A+ D  E L+G  AK QA  N   TI+  KRLIG KFEDKEVQRD++  P++I+   +G  +++ Q      K  SP +ISA +L KMKE AEA+LG+K+ +
Sbjct:    1 MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLDGGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWVKAQ-----GKELSPPQISAEVLRKMKEAAEAYLGEKVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECOUT (Chaperone protein dnaK OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECOLI (Chaperone protein dnaK OS=Escherichia coli (strain K12) GN=dnaK PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECOLC (Chaperone protein dnaK OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECOL6 (Chaperone protein dnaK OS=Escherichia coli O6 GN=dnaK PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECOL5 (Chaperone protein dnaK OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECOK1 (Chaperone protein dnaK OS=Escherichia coli O1:K1 / APEC GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECOHS (Chaperone protein dnaK OS=Escherichia coli O9:H4 (strain HS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECO57 (Chaperone protein dnaK OS=Escherichia coli O157:H7 GN=dnaK PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
[Close]
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: DNAK_ECO24 (Chaperone protein dnaK OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dnaK PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 1 
Query:  223 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + P+KI+  D G  +++V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137
The following BLAST results are available for this feature:
BLAST of FC920600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_NEIM05.870e-2947.89Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_ECOUT5.870e-2945.07Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOLI5.870e-2945.07Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOLC5.870e-2945.07Chaperone protein dnaK OS=Escherichia coli (strain... [more]
DNAK_ECOL65.870e-2945.07Chaperone protein dnaK OS=Escherichia coli O6 GN=d... [more]
DNAK_ECOL55.870e-2945.07Chaperone protein dnaK OS=Escherichia coli O6:K15:... [more]
DNAK_ECOK15.870e-2945.07Chaperone protein dnaK OS=Escherichia coli O1:K1 /... [more]
DNAK_ECOHS5.870e-2945.07Chaperone protein dnaK OS=Escherichia coli O9:H4 (... [more]
DNAK_ECO575.870e-2945.07Chaperone protein dnaK OS=Escherichia coli O157:H7... [more]
DNAK_ECO245.870e-2945.07Chaperone protein dnaK OS=Escherichia coli O139:H2... [more]

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Properties
Property NameValue
Genbank descriptionC32010E11EF RVDevelop1 Citrus clementina cDNA clone C32010E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920600 ID=FC920600; Name=FC920600; organism=Citrus clementina; type=EST; length=644bp
GGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACACACTTCAAACATCGAA
ACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTA
TAATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCC
CTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAAT
TGCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTG
GTACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATC
ATAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCAC
TGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCA
ATCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTT
GAGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGT
GAATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGACGGCGAGA
CCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTATGATACTGACTAAGATG
AAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAATTAAGGATGC
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