FC920601

Overview
NameFC920601
Unique NameFC920601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GLU2A_SCHPO (Glucosidase 2 subunit alpha OS=Schizosaccharomyces pombe GN=gls2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 3
Query:   42 RPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQW-ESVPHSARNALGMMYKL 374
            RPFIL+RS F G+   AA+W GD   TWE L+ SI T+L  GI G+   G+D+ GF+  P  EL  RW E   FYPF R HA+  + R E + + E      R  L + Y+L
Sbjct:  578 RPFILTRSFFAGTSALAANWIGDTMTTWEHLRGSIPTVLTNGISGMAFSGADVAGFFGNPDAELFVRWYETAIFYPFFRAHAHIDTKRREPWLYGEPYTSLVRELLRIRYRL 689          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GANAB_MACFA (Neutral alpha-glucosidase AB OS=Macaca fascicularis GN=GANAB PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.798e-18
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHS-ARNALGMMYKL 374
            +RPF+L+R+ F GS  + A WTGDN   W+ LK SI   L+ G+ G+   G+D+ GF+  P  EL  RW ++GA+ PF R HA+  + R   +   S  +   R+ALG  Y L
Sbjct:  595 ERPFVLARAFFAGSQRFGAVWTGDNTAEWDHLKISIPMCLSLGLVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRRGPWLLPSQHNDIIRDALGQRYSL 707          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGL2_BACTQ (Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.773e-18
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 3
Query:   30 LEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDH 284
            L GKRPF+L+R+ F G   YAA WTGDN+  WE L+ S+   +N G+ GV   G D+ GF      EL  RW++VGAF P+ R+H
Sbjct:  458 LNGKRPFLLTRAGFSGIQRYAAVWTGDNRSFWEHLQMSLPMCMNLGLSGVAFCGPDVGGFAHNTNGELLTRWMQVGAFTPYFRNH 542          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GANC_HUMAN (Neutral alpha-glucosidase C OS=Homo sapiens GN=GANC PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.233e-18
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPE 311
            +RPF+L+RS F GS  Y A WTGDN   W +LK SI  +L   I G+   G+DI GF   P  EL  RW + GA+ PF R HA   + R E
Sbjct:  564 ERPFVLTRSFFAGSQKYGAVWTGDNTAEWSNLKISIPMLLTLSITGISFCGADIGGFIGNPETELLVRWYQAGAYQPFFRGHATMNTKRRE 654          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GANAB_MOUSE (Neutral alpha-glucosidase AB OS=Mus musculus GN=Ganab PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.141e-18
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSA-RNALGMMYKL 374
            +RPF+LSR+ F GS  + A WTGDN   W+ LK SI   L+  + G+   G+D+ GF+  P  EL  RW ++GA+ PF R HA+  + R E +   S    A R+AL   Y L
Sbjct:  595 ERPFVLSRAFFSGSQRFGAVWTGDNTAEWDHLKISIPMCLSLALVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLASQYQDAIRDALFQRYSL 707          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GANC_MACFA (Neutral alpha-glucosidase C (Fragment) OS=Macaca fascicularis GN=GANC PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.814e-17
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPE 311
            +RPF+L+RS F GS  Y A WTGDN   W  LK SI  +L   I G+   G+DI GF   P  EL  RW + GA+ PF R HA   + R E
Sbjct:  419 ERPFVLTRSFFAGSQKYGAVWTGDNTAEWSYLKISIPMLLTLSITGISFCGADIGGFIGNPETELLVRWYQAGAYQPFFRGHATMNAKRRE 509          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: GANAB_DICDI (Neutral alpha-glucosidase AB OS=Dictyostelium discoideum GN=modA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 3
Query:   33 EGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPE 311
            +  RPF+LSR+ + GS    A WTGDN   W  L+ S   +L+  + G+   G+D+ GF+  P  EL  RW + GAF PF R HA+  S R E
Sbjct:  592 QNDRPFVLSRAFYAGSQRIGAIWTGDNSAQWSHLEISNPMLLSMNLAGITFSGADVGGFFGNPDAELLTRWYQAGAFQPFFRGHAHLDSRRRE 684          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_SULSO (Alpha-glucosidase OS=Sulfolobus solfataricus GN=malA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 3
Query:   48 FILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCN------RWIEVGAFYPFSRDH 284
            FILSR+ + G   YA  WTGDN  +W+DLK  +  +L   I GVP VG DI GF      E+ N      ++  +  F+PF R H
Sbjct:  396 FILSRAGYAGIQRYAFIWTGDNTPSWDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYRSH 480          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_SULS9 (Alpha-glucosidase OS=Sulfolobus solfataricus (strain 98/2) GN=malA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 3
Query:   48 FILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCN------RWIEVGAFYPFSRDH 284
            FILSR+ + G   YA  WTGDN  +W+DLK  +  +L   I GVP VG DI GF      E+ N      ++  +  F+PF R H
Sbjct:  396 FILSRAGYAGIQRYAFIWTGDNTPSWDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYRSH 480          
The following BLAST results are available for this feature:
BLAST of FC920601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GLU2A_SCHPO1.640e-1843.75Glucosidase 2 subunit alpha OS=Schizosaccharomyces... [more]
GANAB_MACFA2.798e-1840.71Neutral alpha-glucosidase AB OS=Macaca fasciculari... [more]
AGL2_BACTQ4.773e-1848.24Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefa... [more]
GANC_HUMAN6.233e-1847.25Neutral alpha-glucosidase C OS=Homo sapiens GN=GAN... [more]
GANAB_MOUSE8.141e-1841.59Neutral alpha-glucosidase AB OS=Mus musculus GN=Ga... [more]
GANC_MACFA1.814e-1747.25Neutral alpha-glucosidase C (Fragment) OS=Macaca f... [more]
GANAB_DICDI2.005e-1641.94Neutral alpha-glucosidase AB OS=Dictyostelium disc... [more]
AGLU_SULSO1.942e-1141.18Alpha-glucosidase OS=Sulfolobus solfataricus GN=ma... [more]
AGLU_SULS91.942e-1141.18Alpha-glucosidase OS=Sulfolobus solfataricus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32010E12EF RVDevelop1 Citrus clementina cDNA clone C32010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920601 ID=FC920601; Name=FC920601; organism=Citrus clementina; type=EST; length=374bp
ATCGCCGGGCATGAGTAGCTCTTCTAGGGCTCGAAGGCAAGAGGCCATTC
ATATTATCACGCTCTACTTTTGTTGGTTCTGGTCATTATGCCGCACACTG
GACGGGTGATAATAAGGGAACATGGGAAGATCTAAAGTATTCTATTTCAA
CCATGCTGAACTTCGGCATATTTGGGGTTCCGATGGTTGGTTCCGATATA
TGTGGGTTCTATCCTGCCCCAACAGAAGAGCTTTGTAACCGATGGATAGA
AGTAGGTGCATTCTATCCGTTCTCAAGGGATCATGCAAACTACTACTCCC
CAAGACCGGAGCTTTATCAGTGGGAGTCAGTACCACACTCCGCCCGAAAT
GCTCTGGGTATGATGTATAAACTA
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