FC920605
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS2L_HUMAN (tRNA-dihydrouridine synthase 2-like OS=Homo sapiens GN=DUS2L PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.079e-33 Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 1 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 VVFRTC +E+N VVFQMGTSDA RAL A++V DVA I++NMGCPK +S GGMGAALLS P+ I IL+ L + P+TCKIR+ S +DT+ L ++IE+TG++A+AVHGR Sbjct: 72 VVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGR 185
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS2L_MOUSE (tRNA-dihydrouridine synthase 2-like OS=Mus musculus GN=Dus2l PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.409e-33 Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 1 Query: 1 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 VVFRTC +E++ VVFQMGTSDA RAL A++V DVA I++NMGCPK +S GGMGAALLS P+ I IL+ L + P+TCKIR+ S +DT+ L ++IE+TG+SA+AVHGR Sbjct: 72 VVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGR 185
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS2_SCHPO (tRNA-dihydrouridine synthase 2 OS=Schizosaccharomyces pombe GN=dus2 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.865e-20 Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = 1 Query: 1 VVFRTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP----LTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 V+FR E N ++FQ+G++ A+ AAK+V DVA I++N GCPK FSV GMGA LL + + IL L + P ++CKIRL ++ +DT++L +I TGV A+ VH R Sbjct: 72 VLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVHAGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRAITVHCR 189
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS2_YEAST (tRNA-dihydrouridine synthase 2 OS=Saccharomyces cerevisiae GN=SMM1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.118e-17 Identity = 49/119 (41.18%), Postives = 75/119 (63.03%), Query Frame = 1 Query: 1 VVFRTCHQ-ERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL----DVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 +VFRT + E + ++FQ+G++ A AA V DV+ I+IN GCPK FS+ GMG+ALL P+ + IL L +N+ P++ KIRL + QDT++L +++ TG++ L VH R Sbjct: 72 LVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGITNLTVHCR 190
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS4L_MOUSE (tRNA-dihydrouridine synthase 4-like OS=Mus musculus GN=Dus4l PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.951e-15 Identity = 41/113 (36.28%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 13 TCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP---LTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 T +Q ++ Q +DA AA +VC I+IN GCP+ ++++ G GA L++KPEL+HD++ ++ ++ P ++ KIR+ T++L R+ E TGVS + VHGR Sbjct: 76 TTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGR 188
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS4L_HUMAN (tRNA-dihydrouridine synthase 4-like OS=Homo sapiens GN=DUS4L PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14 Identity = 40/113 (35.40%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 13 TCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVP---LTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 T +Q ++ Q +DA AA++VC I+IN GCP+ ++++ G GA L++KPEL+ D++ ++ ++ P ++ KIR+ + TV+L ++ E TGVS + VHGR Sbjct: 76 TTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGR 188
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: YQI2_CAEEL (Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.619e-13 Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1 Query: 37 VVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNL---DVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 ++ Q T D AA+MV K +++N GCPK S G G+ALLSKPEL+ D++ + + D ++ KIR++ + TV+L R+ E GV+ L VHGR Sbjct: 51 LIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGR 155
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe GN=dus1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.115e-13 Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 10 RTCHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 RT +ER ++ Q +D L AAK+ A+++N+GCP+ + G G+ L LI I+T L L +P+T KIR+ Q T++ A+ I K G S LAVHGR Sbjct: 69 RTIPEERP-LIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGR 178
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine synthase 1 OS=Saccharomyces cerevisiae GN=DUS1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12 Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 37 VVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 +V Q +D L AAK+V A+++N+GCP+ + G G+ L+ + +LIH+++ L +NL VP+T KIR+ + ++ A+ + G L VHGR Sbjct: 89 LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGR 190
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS4_SCHPO (tRNA-dihydrouridine synthase 4 OS=Schizosaccharomyces pombe GN=dus4 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12 Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1 Query: 37 VVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPL--TCKIRLSKSSQDTVELARQIEKTGVSALAVHGR 342 ++ Q G D V AA++V V I IN GCP+++++ G+G+ALL +PE +H ++ +K L KIR++K T L + IEK+G + VHGR Sbjct: 76 LILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGR 179 The following BLAST results are available for this feature:
BLAST of FC920605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920605 ID=FC920605; Name=FC920605; organism=Citrus clementina; type=EST; length=358bpback to top |