FC920605

Overview
NameFC920605
Unique NameFC920605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length358
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUSB_PROVU (tRNA-dihydrouridine synthase B OS=Proteus vulgaris GN=dusB PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   46 QMGTSDAVRALTAAKMVCKDVAAI-NINMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRL--SKSSQDTVELARQIEKTGVSALAVHGR 342
            Q+  SD V    AAK+     A I +INMGCP         G+ALL  P+L+ +IL+ +   +DVP+T KIR   S   ++ VE+A+  E+ G+ AL +HGR
Sbjct:   70 QIAGSDPVDMAAAAKINADSGAQIIDINMGCPAKKVNKKLAGSALLRHPDLVAEILSAVVNAVDVPVTLKIRTGWSPDERNCVEIAKLAERCGIQALTIHGR 171          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUSA_VIBVU (tRNA-dihydrouridine synthase A OS=Vibrio vulnificus GN=dusA PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 36/118 (30.51%), Postives = 59/118 (50.00%), Query Frame = 1
Query:    7 FRTCHQERNHVVFQMGTSDAVRALTAAKMVC-KDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQI-----EKTGVSALAVHGR 342
            F   +QE + V  Q+G S+     T AK+   +    +N+N+GCP     +G  GA L+++P+L+ D +  +K  +D+P+T K R+    QD+ E          EK G     +H R
Sbjct:   50 FLAYNQEEHPVALQLGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHAR 167          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS1L_RAT (tRNA-dihydrouridine synthase 1-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   16 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGRPSLKK 357
            C ++R  +V Q   +D    + AA +      AI++N+GCP+  +  G  GA L  + +L+  ++ +    L VP+TCKIR+      TV  A+ +EK G   L VHGR   +K
Sbjct:   70 CPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQK 182          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS1L_MOUSE (tRNA-dihydrouridine synthase 1-like OS=Mus musculus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   16 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGRPSLKK 357
            C ++R  +V Q   +D    + AA +      AI++N+GCP+  +  G  GA L  + +L+  ++ +    L VP+TCKIR+      TV  A+ +EK G   L VHGR   +K
Sbjct:   70 CPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQK 182          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUS1L_HUMAN (tRNA-dihydrouridine synthase 1-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   16 CHQERNHVVFQMGTSDAVRALTAAKMVCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRLSKSSQDTVELARQIEKTGVSALAVHGRPSLKK 357
            C ++R  +V Q   +D    + AA +      AI++N+GCP+  +  G  GA L  + +L+  ++ +    L VP+TCKIR+      TV  A+ +EK G   L VHGR   +K
Sbjct:   70 CPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQK 182          
BLAST of FC920605 vs. ExPASy Swiss-Prot
Match: DUSB_HAEDU (tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi GN=dusB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   19 HQERNHVVFQMGTSDAVRALTAAKM-VCKDVAAININMGCPKSFSVSGGMGAALLSKPELIHDILTMLKRNLDVPLTCKIRL--SKSSQDTVELARQIEKTGVSALAVHGR 342
            H E      Q+  S+      AAK+ V      I+INMGCP         G+ALL +P+L+  IL  +   +DVP+T KIR    K+ ++ +++A+  EK G+SAL +HGR
Sbjct:   61 HAEIGINAVQIAGSEPTEIAEAAKINVAYGAQIIDINMGCPAKKVNKKMAGSALLREPQLVARILDAVVNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHGR 171          
The following BLAST results are available for this feature:
BLAST of FC920605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DUSB_PROVU4.410e-1140.20tRNA-dihydrouridine synthase B OS=Proteus vulgaris... [more]
DUSA_VIBVU4.410e-1130.51tRNA-dihydrouridine synthase A OS=Vibrio vulnificu... [more]
DUS1L_RAT7.522e-1133.33tRNA-dihydrouridine synthase 1-like OS=Rattus norv... [more]
DUS1L_MOUSE7.522e-1133.33tRNA-dihydrouridine synthase 1-like OS=Mus musculu... [more]
DUS1L_HUMAN7.522e-1133.33tRNA-dihydrouridine synthase 1-like OS=Homo sapien... [more]
DUSB_HAEDU9.824e-1136.94tRNA-dihydrouridine synthase B OS=Haemophilus ducr... [more]

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Properties
Property NameValue
Genbank descriptionC32010F06EF RVDevelop1 Citrus clementina cDNA clone C32010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920605 ID=FC920605; Name=FC920605; organism=Citrus clementina; type=EST; length=358bp
GTTGTATTTAGAACTTGTCATCAAGAAAGAAACCACGTAGTGTTTCAAAT
GGGAACTTCTGATGCTGTGAGGGCTTTAACTGCTGCCAAGATGGTGTGTA
AAGATGTTGCTGCAATAAATATTAATATGGGCTGCCCCAAATCGTTTTCT
GTGAGTGGAGGCATGGGTGCTGCACTGTTGTCTAAGCCGGAGCTCATTCA
TGATATTTTGACAATGCTAAAGAGGAACTTGGATGTGCCACTGACATGCA
AGATTCGACTTTCTAAATCGTCTCAGGATACTGTAGAACTAGCTAGGCAA
ATCGAGAAAACAGGAGTTTCTGCTCTCGCTGTCCATGGAAGGCCATCTCT
AAAAAAGT
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