FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_VIBFM (Phosphoserine aminotransferase OS=Vibrio fischeri (strain MJ11) GN=serC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 70/118 (59.32%), Postives = 81/118 (68.64%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            ++VFNF AGPA LP  VL +AQ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF QGGA  QFAAVPLNL   N   DY+  G W+  A +EAQK+C P VI
Sbjct:    2 EKVFNFCAGPAMLPVDVLAQAQKELVNWNGLGTSVMEISHRSKEFIKVAEESEQDLRDLLAIPSNYKVLFCQGGARAQFAAVPLNLLGGNTKADYVDAGYWAQSAVEEAQKYCTPNVI 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_VIBF1 (Phosphoserine aminotransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=serC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 70/118 (59.32%), Postives = 81/118 (68.64%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            ++VFNF AGPA LP  VL +AQ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF QGGA  QFAAVPLNL   N   DY+  G W+  A +EAQK+C P VI
Sbjct:    2 EKVFNFCAGPAMLPVDVLAQAQKELVNWNGLGTSVMEISHRSKEFIKVAEESEQDLRDLLAIPDNYKVLFCQGGARAQFAAVPLNLLGGNTKADYVDAGYWAQSAVEEAQKYCTPNVI 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEFS (Phosphoserine aminotransferase OS=Pseudomonas fluorescens (strain SBW25) GN=serC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 72/129 (55.81%), Postives = 84/129 (65.12%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R +NF AGPA LPE VL +AQ EL +W G G+SVMEMSHR  EF SI  KAE DLR LL IP  Y VLFLQGGA+ QFA +PLNL   +   DYI TG W  KA +EA ++ +  V  + K   Y  IP
Sbjct:    4 RAYNFCAGPAALPEAVLQRAQGELLDWHGKGLSVMEMSHRSDEFVSIATKAEQDLRDLLGIPSHYKVLFLQGGASQQFAQIPLNLLPEDGTADYIDTGIWGQKAIEEASRYGHVNVAGTAKPYDYFAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_LARHH (Phosphoserine aminotransferase OS=Laribacter hongkongensis (strain HLHK9) GN=serC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 3
Query:  288 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            ++NF+AGPA LP+ VL +AQ EL +W GSGMSVMEMSHRG+EF SI  +AE+DLR LL IP  Y VLFLQGGA +QF+ VP+NL       DY++TG W   A KEA+ + + ++  +G+A  +  IP
Sbjct:    3 IYNFSAGPALLPQDVLREAQRELTDWHGSGMSVMEMSHRGREFMSIHARAEADLRELLQIPDNYRVLFLQGGAHSQFSMVPMNLLRGKTTADYVITGHWGKVAIKEARCYGDMRIAATGEASGFNGIP 130          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_BURP8 (Phosphoserine aminotransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=serC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.372e-33
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGK-AEKYTKIP 671
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF +I E+A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+FKEAQK+    +  SG+ A  +T +P
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWGGSGMSVMEMSHRGKEFMTIHEEALTDLRELLQVPSSHHILFLQGGGLGENAIVPMNLMGRKARADFVVTGSWSQKSFKEAQKYGTVHLAASGETANGFTHVP 131          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_LEPBP (Phosphoserine aminotransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=serC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 67/130 (51.54%), Postives = 97/130 (74.62%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFC-NPQVIWSGKAEKYTKIP 671
            R++NF AGPA LP +V+ +A+SE  N+RG+GMSVMEMSHR K F+SI++++ SDLR LLN+P  Y+V++  GGAT QF+A+P N  +  D  D+ +TG W+ KAF+EA+KF  N + I++G   KY ++P
Sbjct:    7 RIYNFNAGPAMLPTEVMEEAKSEFLNFRGTGMSVMEMSHREKHFQSILDESISDLRELLNLPSRYAVVYFPGGATLQFSAIPFNYLSSGDSCDFALTGVWAKKAFEEAKKFYPNVKSIFNGADSKYMELP 136          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_LEPBA (Phosphoserine aminotransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=serC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 67/130 (51.54%), Postives = 97/130 (74.62%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFC-NPQVIWSGKAEKYTKIP 671
            R++NF AGPA LP +V+ +A+SE  N+RG+GMSVMEMSHR K F+SI++++ SDLR LLN+P  Y+V++  GGAT QF+A+P N  +  D  D+ +TG W+ KAF+EA+KF  N + I++G   KY ++P
Sbjct:    7 RIYNFNAGPAMLPTEVMEEAKSEFLNFRGTGMSVMEMSHREKHFQSILDESISDLRELLNLPSRYAVVYFPGGATLQFSAIPFNYLSSGDSCDFALTGVWAKKAFEEAKKFYPNVKSIFNGADSKYMELP 136          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_XYLFT (Phosphoserine aminotransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=serC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPN 674
            R+FNF+ GPA LPE VL +AQ+E+  W   G SVME+SHR  EF ++ +  ESDLR LL +P +Y+VLFL GGATTQ A +PLN   P    DY+VTG WS  A K+A  + N  V+  G+ + +  IPN
Sbjct:    4 RIFNFSPGPATLPEPVLRQAQAEMLEWNAVGASVMEISHRSAEFIALAKGIESDLRCLLGVPDDYAVLFLSGGATTQQALLPLNFAAPGQTADYVVTGHWSKTALKQASPYVNINVVADGERDGFQDIPN 133          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_SODGM (Phosphoserine aminotransferase OS=Sodalis glossinidius (strain morsitans) GN=serC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            ++VFNF++GPA LP +VL KA+ EL NW G G SVME+SHR KEF  + + +E DLR LL +P  Y VLF QGGA  QFAAVP+NL       DYI  G W+  A KEAQK+C+PQVI
Sbjct:    2 NQVFNFSSGPAMLPAEVLRKAEQELCNWHGLGTSVMEISHRSKEFLEVAQSSEQDLRELLAVPDNYKVLFCQGGARAQFAAVPMNLLGEATRADYIDGGYWAHSAIKEAQKYCDPQVI 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_HAHCH (Phosphoserine aminotransferase OS=Hahella chejuensis (strain KCTC 2396) GN=serC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            DR FNF AGP+ LP +VLL+AQ+EL +WRG G+S+MEMSHR  +F ++  +AE D R L+++P  Y VLF+QGGA TQFA+VPLNL       DYI TG WS KA  EA ++    V  S K   Y  IP
Sbjct:    3 DRKFNFCAGPSALPTEVLLQAQAELLDWRGKGLSIMEMSHRSDDFVAVAVEAERDFRELMSVPDNYKVLFVQGGAATQFASVPLNLLKLGAEADYIDTGIWSKKAIAEAGRYLKVNVAASAKDNGYACIP 132          
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_VIBFM1.503e-3359.32Phosphoserine aminotransferase OS=Vibrio fischeri ... [more]
SERC_VIBF11.503e-3359.32Phosphoserine aminotransferase OS=Vibrio fischeri ... [more]
SERC_PSEFS2.563e-3355.81Phosphoserine aminotransferase OS=Pseudomonas fluo... [more]
SERC_LARHH2.563e-3353.91Phosphoserine aminotransferase OS=Laribacter hongk... [more]
SERC_BURP84.372e-3354.62Phosphoserine aminotransferase OS=Burkholderia phy... [more]
SERC_LEPBP5.711e-3351.54Phosphoserine aminotransferase OS=Leptospira bifle... [more]
SERC_LEPBA5.711e-3351.54Phosphoserine aminotransferase OS=Leptospira bifle... [more]
SERC_XYLFT7.458e-3350.77Phosphoserine aminotransferase OS=Xylella fastidio... [more]
SERC_SODGM7.458e-3357.63Phosphoserine aminotransferase OS=Sodalis glossini... [more]
SERC_HAHCH9.741e-3353.08Phosphoserine aminotransferase OS=Hahella chejuens... [more]

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Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
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