FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERPY (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL   ++  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDSNSADYIDGGYWAHSAVKEAQKYCTPHVI 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERPS (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL   ++  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDSNSADYIDGGYWAHSAVKEAQKYCTPHVI 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERPP (Phosphoserine aminotransferase OS=Yersinia pestis (strain Pestoides F) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL    +  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYIDGGYWAHSAIKEAQKYCTPNVI 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERPG (Phosphoserine aminotransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL    +  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYIDGGYWAHSAIKEAQKYCTPNVI 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERPE (Phosphoserine aminotransferase OS=Yersinia pestis GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL    +  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYIDGGYWAHSAIKEAQKYCTPNVI 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERPB (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL   ++  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDSNSADYIDGGYWAHSAVKEAQKYCTPHVI 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERPA (Phosphoserine aminotransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL    +  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYIDGGYWAHSAIKEAQKYCTPNVI 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERP3 (Phosphoserine aminotransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=serC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E++E DLR LL IP  Y VLF  GGA  QFAAVPLNL   ++  DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEESEKDLRDLLQIPANYKVLFCHGGARAQFAAVPLNLLGDSNSADYIDGGYWAHSAVKEAQKYCTPHVI 119
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEST (Phosphoserine aminotransferase OS=Pseudomonas stutzeri GN=serC PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.662e-32
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKI 668
            R FNF AGPA LPE VL +AQ+EL +W+G G+SVMEMSHR   + +I EKAE DLR L+ IP +Y VLFLQGGA+ QFA +PLNL       DY+ TG WS K+ +EA++F N  +  S K   Y  I
Sbjct:    4 RAFNFCAGPAALPEAVLQRAQAELLDWQGRGLSVMEMSHRSDAYVAIAEKAEQDLRDLMAIPSDYKVLFLQGGASQQFAEIPLNLLPEGGVADYVDTGIWSRKSIEEARRFGNVNLAASAKPYDYFAI 131
[Close]
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_RALSO (Phosphoserine aminotransferase OS=Ralstonia solanacearum GN=serC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 70/137 (51.09%), Postives = 98/137 (71.53%), Query Frame = 3 
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLN----LCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFDA 683
            RV+NF+AGPA LP +VL +A+ E+ +W+GSGMSVMEMSHRG+EF+SI+ +A +DLR LL +P  Y +LFLQGGA  + A VPLN    L       DY+VTG+WS K+ +EA+K+    +  S +AE++ +IP+  A
Sbjct:   14 RVYNFSAGPAVLPTEVLEQAREEMLSWQGSGMSVMEMSHRGREFESIMAQAFADLRELLAVPDNYEILFLQGGAIAENAIVPLNLMRRLSLDAPKADYVVTGTWSVKSQQEARKYGEVNIAASSEAERFHRIPDVSA 150
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_YERPY1.662e-3258.12Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_YERPS1.662e-3258.12Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_YERPP1.662e-3258.12Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERPG1.662e-3258.12Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERPE1.662e-3258.12Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERPB1.662e-3258.12Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_YERPA1.662e-3258.12Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERP31.662e-3258.12Phosphoserine aminotransferase OS=Yersinia pseudot... [more]
SERC_PSEST1.662e-3254.69Phosphoserine aminotransferase OS=Pseudomonas stut... [more]
SERC_RALSO2.170e-3251.09Phosphoserine aminotransferase OS=Ralstonia solana... [more]

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Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
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