FC920615

Overview
NameFC920615
Unique NameFC920615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_AZOVD (Phosphoserine aminotransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=serC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32
Identity = 70/129 (54.26%), Postives = 85/129 (65.89%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LP  VL +AQ+E  +W+G G+SVMEMSHR  E+ +I  KAE DLR LL IP  Y VLFLQGGA+ QFA +PLNL       DY+ TG WS K+ +EA++F    V  S KA  Y  +P
Sbjct:    4 RAFNFCAGPAALPTAVLERAQAEFLDWQGKGLSVMEMSHRSDEYVAIAAKAEQDLRDLLGIPSNYKVLFLQGGASQQFAEIPLNLLPEGGVADYVDTGIWSRKSMEEARRFGTVNVAASAKAYDYFALP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_YERE8 (Phosphoserine aminotransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=serC PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.834e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            +V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF  + E+AE DLR L+ IP  Y VLF  GGA  QFAAVPLNL   +   DYI  G W+  A KEAQK+C P VI
Sbjct:    3 QVYNFSAGPAMLPVEVLRRAEQELRNWHGLGTSVMEISHRSKEFMQVAEEAEKDLRDLMQIPANYKVLFCHGGARAQFAAVPLNLLGDSRSADYIDGGYWAHSAVKEAQKYCTPNVI 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_VIBPA (Phosphoserine aminotransferase OS=Vibrio parahaemolyticus GN=serC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.834e-32
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  282 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQV 632
            D VFNF+AGPA LP+ V+ +AQ EL +W+G G SVME+SHR KEF  + ++AE DLR LLNIP  Y VLF QGGA  QFAAVPLNL    +   YI  G W++ A +EA+K+C P V
Sbjct:    6 DNVFNFSAGPAALPKAVMQQAQQELIDWQGLGTSVMEISHRSKEFIKVAQEAEQDLRDLLNIPDNYKVLFCQGGARAQFAAVPLNLLGDAETATYIDGGYWAESAVEEAKKYCEPDV 122          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_COXBN (Phosphoserine aminotransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=serC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.834e-32
Identity = 64/130 (49.23%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPN 674
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+AE DLR LL +P+ Y +LFLQGG+  QFA VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   YT IP+
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAERDLRELLAVPESYHILFLQGGSRLQFAMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNYTGIPD 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_COXB2 (Phosphoserine aminotransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=serC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.834e-32
Identity = 64/130 (49.23%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPN 674
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+AE DLR LL +P+ Y +LFLQGG+  QFA VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   YT IP+
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAERDLRELLAVPESYHILFLQGGSRLQFAMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNYTGIPD 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_COXB1 (Phosphoserine aminotransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=serC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.834e-32
Identity = 64/130 (49.23%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIPN 674
            RV+NF+AGPA +PE+VL   + EL +W G GMS+ E+SHRG+EF  + E+AE DLR LL +P+ Y +LFLQGG+  QFA VP+NL   +    YI +G WS+ A +EA+ +C+P +  + K   YT IP+
Sbjct:    3 RVYNFSAGPAAIPEEVLFTVRDELLDWHGIGMSIAEVSHRGEEFIGVAEEAERDLRELLAVPESYHILFLQGGSRLQFAMVPMNLLANHKKAVYIDSGVWSNLAIREAKNYCDPHLATNAKELNYTGIPD 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_PSEMY (Phosphoserine aminotransferase OS=Pseudomonas mendocina (strain ymp) GN=serC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            R FNF AGPA LP  VL +AQ+E+ +W+G G+SVMEMSHR  E+ +I  +AE DLR LL +P +Y VLFLQGGA+ QFA +PLNL   +   DY+ TG WS KA +EA+++    V  S K+  Y  IP
Sbjct:    4 RAFNFCAGPAALPTAVLQRAQAEMLDWQGKGLSVMEMSHRSDEYVAIASQAEQDLRDLLAVPNDYKVLFLQGGASQQFAEIPLNLLPEDGVADYVETGIWSKKAIEEARRYGAINVAASAKSYDYFAIP 132          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ERWT9 (Phosphoserine aminotransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=serC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVI 635
            ++FNF++GPA LP +VL +A+ EL NWRG G SVME+SHR KEF  + E+AE D R LL IP  Y VLF  GGA  QFAAVPLNL   +   DY+  G W+  A KEAQK+C P VI
Sbjct:    3 QIFNFSSGPAMLPVEVLRRAEQELCNWRGLGTSVMEISHRSKEFIQVAEEAEKDFRDLLKIPSNYKVLFCHGGARGQFAAVPLNLLGQHGKADYVDGGYWAASAIKEAQKYCTPNVI 119          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_AZOSE (Phosphoserine aminotransferase OS=Azoarcus sp. (strain EbN1) GN=serC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 3
Query:  285 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 611
            RV+NF+AGPA LPE VL +A  E+ +W+G+G  VMEMSHRGKEF SI+ +AE+DLR LL IP  Y VLFLQGGAT QFA +P+NL       DY+VTGSWS KA+ EA+
Sbjct:    3 RVYNFSAGPAALPEAVLQQAAEEMLDWQGAGCGVMEMSHRGKEFTSIVAQAEADLRELLAIPDNYRVLFLQGGATQQFAQIPMNLLA-GGSADYLVTGSWSKKAYGEAK 110          
BLAST of FC920615 vs. ExPASy Swiss-Prot
Match: SERC_ACIF5 (Phosphoserine aminotransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=serC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 69/128 (53.91%), Postives = 86/128 (67.19%), Query Frame = 3
Query:  288 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVIWSGKAEKYTKIP 671
            +FNF+AGPA LP  VL + Q+EL +W GSGMSVMEMSHRG EF  I  +AE DLR LL+IP  Y +LFLQGGAT QFA VPLNL   +    Y+ TG WS KA  EA++F   ++  S +    + +P
Sbjct:    5 IFNFSAGPAVLPHVVLEQVQAELLDWHGSGMSVMEMSHRGPEFMKIAAEAEQDLRDLLDIPANYKILFLQGGATLQFAMVPLNLMRGHGKASYVQTGIWSKKAIAEARRFTAVEIAASNEDRHASYVP 132          
The following BLAST results are available for this feature:
BLAST of FC920615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_AZOVD2.170e-3254.26Phosphoserine aminotransferase OS=Azotobacter vine... [more]
SERC_YERE82.834e-3258.12Phosphoserine aminotransferase OS=Yersinia enteroc... [more]
SERC_VIBPA2.834e-3257.26Phosphoserine aminotransferase OS=Vibrio parahaemo... [more]
SERC_COXBN2.834e-3249.23Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_COXB22.834e-3249.23Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_COXB12.834e-3249.23Phosphoserine aminotransferase OS=Coxiella burneti... [more]
SERC_PSEMY3.701e-3252.71Phosphoserine aminotransferase OS=Pseudomonas mend... [more]
SERC_ERWT93.701e-3257.26Phosphoserine aminotransferase OS=Erwinia tasmanie... [more]
SERC_AZOSE3.701e-3262.39Phosphoserine aminotransferase OS=Azoarcus sp. (st... [more]
SERC_ACIF54.834e-3253.91Phosphoserine aminotransferase OS=Acidithiobacillu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32010G08EF RVDevelop1 Citrus clementina cDNA clone C32010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920615 ID=FC920615; Name=FC920615; organism=Citrus clementina; type=EST; length=684bp
AAAAGCCAAAAAAGAAAAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTC
TCTCTTTCAACTAGCAGCTGCTAAGCCATGGCAACGACGACATCATCACC
TCACTCACTGTTTCTCCAGAACCGTAATAGCCACCCACTCAATAAAAACA
ATCTCGCATCTTTCACCAACCTTAAAAAGATCAATTTTTTTAACACCAAA
AGAGCCATTTCAGTCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCG
AACGGCGGCCCAGATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCG
CTGCGGGCCCCGCTAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCG
GAGCTTTACAACTGGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCA
TAGAGGTAAAGAATTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTA
GAGCCCTCTTGAATATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGC
GGCGCTACGACACAGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAA
TGACCCGGTCGATTATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTA
AAGAAGCGCAAAAATTTTGCAACCCACAAGTGATTTGGTCTGGAAAAGCT
GAAAAGTACACAAAGATTCCAAATTTTGATGCTT
back to top