FC920619

Overview
NameFC920619
Unique NameFC920619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 734
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSM
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 734
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSM
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 734
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSM
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 75          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 734
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSM
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  510 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 734
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSM
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.437e-21
Identity = 52/83 (62.65%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  489 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 734
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGRLAMFSM
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSM 83          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.826e-20
Identity = 63/160 (39.38%), Postives = 82/160 (51.25%), Query Frame = 3
Query:  258 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSM 734
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA+ ++
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAI 203          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 68/192 (35.42%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  159 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFS 731
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGRLAM +
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLA 201          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 72/237 (30.38%), Postives = 106/237 (44.73%), Query Frame = 3
Query:   66 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 734
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAV 233          
BLAST of FC920619 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 63/180 (35.00%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  216 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSM 734
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAV 233          
The following BLAST results are available for this feature:
BLAST of FC920619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB2F_SOLLC2.556e-2168.00Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.556e-2168.00Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.556e-2168.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.556e-2168.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.556e-2168.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA7.437e-2162.65Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB11_SOLLC2.826e-2039.38Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU6.296e-2035.42Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC1.403e-1930.38Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY3.124e-1935.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32010H01EF RVDevelop1 Citrus clementina cDNA clone C32010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920619 ID=FC920619; Name=FC920619; organism=Citrus clementina; type=EST; length=735bp
GGATATTCAGAGTGCGAAAAGTCGCTTCAGCAACAAAAGGAAAAGCTTTC
GCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGG
CCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTG
CTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAG
AGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGA
GCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGG
ATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAG
CTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGT
CTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTT
GGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTT
GGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTG
CCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTC
CTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCA
CTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGA
GCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGT
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