FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SALTI (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhi GN=msbA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+HS LL  +  G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SALCH (Lipid A export ATP-binding/permease protein msbA OS=Salmonella choleraesuis GN=msbA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+HS LL  +  G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PASMU (Lipid A export ATP-binding/permease protein msbA OS=Pasteurella multocida GN=msbA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + +++LDEATSALD ESERS+Q AL++    +T IV+AHRLSTI NA  I VI+ G++ E GSHS LL  N  G Y ++  +Q
Sbjct:  494 ALLRNSPVLILDEATSALDTESERSIQLALEKLQKERTVIVIAHRLSTIENADEILVIEHGEIKERGSHSELLALN--GAYKQLHHIQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURXL (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia xenovorans (strain LB400) GN=msbA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+    G+TT+V+AHRLSTI  A  I V++ G++ E GSH  LL    DG YA + ++Q
Sbjct:  506 AIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVMEAGRIVESGSHRELLAQ--DGLYAHLHRIQ 591          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: HMT1_SCHPO (Heavy metal tolerance protein OS=Schizosaccharomyces pombe GN=hmt1 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSS 310
            A ++   I+LLDEATSALD  +ER +Q AL+R  SG+T IV+AHRLSTI NA +I  I +G++ E G+H  L+K +  G Y +M         Q +G TS  +
Sbjct:  734 AILKDPSIILLDEATSALDTNTERQIQAALNRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEELIKRD-GGAYKKM------WFQQAMGKTSAET 829          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SYNAS (Lipid A export ATP-binding/permease protein msbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEATS+LD E+E  VQEAL+R   G+TT+V+AHRLSTIRNA  I V+  G++ E G+H  LL     G Y ++ QLQ
Sbjct:  501 ALLKNAPILILDEATSSLDTEAEMEVQEALERLMKGRTTLVIAHRLSTIRNADRIVVLVKGEIVEEGAHETLLARR--GEYYKLHQLQ 586          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHISS (Lipid A export ATP-binding/permease protein msbA OS=Shigella sonnei (strain Ss046) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHIFL (Lipid A export ATP-binding/permease protein msbA OS=Shigella flexneri GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHIDS (Lipid A export ATP-binding/permease protein msbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHIBS (Lipid A export ATP-binding/permease protein msbA OS=Shigella boydii serotype 4 (strain Sb227) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MSBA_SALTI4.576e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALCH4.576e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PASMU4.576e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURXL4.576e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
HMT1_SCHPO4.576e-1745.63Heavy metal tolerance protein OS=Schizosaccharomyc... [more]
MSBA_SYNAS5.976e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHISS5.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIFL5.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIDS5.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIBS5.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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