FC920628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SALTI (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhi GN=msbA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17 Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+HS LL + G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SALCH (Lipid A export ATP-binding/permease protein msbA OS=Salmonella choleraesuis GN=msbA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17 Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+HS LL + G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PASMU (Lipid A export ATP-binding/permease protein msbA OS=Pasteurella multocida GN=msbA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17 Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + +++LDEATSALD ESERS+Q AL++ +T IV+AHRLSTI NA I VI+ G++ E GSHS LL N G Y ++ +Q Sbjct: 494 ALLRNSPVLILDEATSALDTESERSIQLALEKLQKERTVIVIAHRLSTIENADEILVIEHGEIKERGSHSELLALN--GAYKQLHHIQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURXL (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia xenovorans (strain LB400) GN=msbA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17 Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A + A I++LDEATSALD+ESER VQ AL+ G+TT+V+AHRLSTI A I V++ G++ E GSH LL DG YA + ++Q Sbjct: 506 AIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVMEAGRIVESGSHRELLAQ--DGLYAHLHRIQ 591
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: HMT1_SCHPO (Heavy metal tolerance protein OS=Schizosaccharomyces pombe GN=hmt1 PE=2 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17 Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSS 310 A ++ I+LLDEATSALD +ER +Q AL+R SG+T IV+AHRLSTI NA +I I +G++ E G+H L+K + G Y +M Q +G TS + Sbjct: 734 AILKDPSIILLDEATSALDTNTERQIQAALNRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEELIKRD-GGAYKKM------WFQQAMGKTSAET 829
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SYNAS (Lipid A export ATP-binding/permease protein msbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ A I++LDEATS+LD E+E VQEAL+R G+TT+V+AHRLSTIRNA I V+ G++ E G+H LL G Y ++ QLQ Sbjct: 501 ALLKNAPILILDEATSSLDTEAEMEVQEALERLMKGRTTLVIAHRLSTIRNADRIVVLVKGEIVEEGAHETLLARR--GEYYKLHQLQ 586
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHISS (Lipid A export ATP-binding/permease protein msbA OS=Shigella sonnei (strain Ss046) GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHIFL (Lipid A export ATP-binding/permease protein msbA OS=Shigella flexneri GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHIDS (Lipid A export ATP-binding/permease protein msbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHIBS (Lipid A export ATP-binding/permease protein msbA OS=Shigella boydii serotype 4 (strain Sb227) GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579 The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 263
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bpback to top |