FC920628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHEDO (Lipid A export ATP-binding/permease protein msbA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESE+++Q LD +T+IV+AHRLSTI +A I VID GK+ E G+H+ L++ G YA + Q+Q Sbjct: 512 AMLRDAPVLILDEATSALDTESEKAIQLGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIIERGTHASLIEKK--GAYAGLYQMQ 597
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECOUT (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain UTI89 / UPEC) GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECOLI (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain K12) GN=msbA PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL6 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6 GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL5 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECO57 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O157:H7 GN=msbA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+H+ LL++ G YA++ ++Q Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17 Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSAR 322 A ++ I+LLDE+TSALDAES + VQEALD G+TTIV+AH LSTIRNA VI I G E G+H L+ G Y +++ Q +H Q+ + + S R Sbjct: 666 AVIKNPNILLLDESTSALDAESTKLVQEALDVLMKGRTTIVIAHNLSTIRNADVIIYIKKGVAVERGTHDELMAK--QGLYFDLVEKQ--SHQQMYNLLENGTRSRR 768 HSP 2 Score: 80.8777 bits (198), Expect = 3.279e-15 Identity = 41/84 (48.81%), Postives = 60/84 (71.43%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A +R +I+LLDE+TSALDA+S + VQEAL+ G+TTIV+AH L TI+NA IA + G++ E G+H LL+ +G Y+++ Sbjct: 1344 AIIRNPKILLLDESTSALDADSTKLVQEALENVMKGRTTIVIAHNLLTIQNADCIAYVRAGQIIERGTHDELLE--AEGPYSQL 1425
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_YERPS (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pseudotuberculosis GN=msbA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17 Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I VI+DG++ E G H+ LL G YA++ ++Q Sbjct: 494 ALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQ--QGVYAQLNRMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_YERPN (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msbA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17 Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I VI+DG++ E G H+ LL G YA++ ++Q Sbjct: 494 ALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQ--QGVYAQLNRMQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_YERPE (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis GN=msbA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17 Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R I++LDEATSALD ESER++Q ALD +T++V+AHRLSTI A I VI+DG++ E G H+ LL G YA++ ++Q Sbjct: 494 ALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQ--QGVYAQLNRMQ 579 The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 263
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bpback to top |