FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHEDO (Lipid A export ATP-binding/permease protein msbA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESE+++Q  LD     +T+IV+AHRLSTI +A  I VID GK+ E G+H+ L++    G YA + Q+Q
Sbjct:  512 AMLRDAPVLILDEATSALDTESEKAIQLGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIIERGTHASLIEKK--GAYAGLYQMQ 597          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECOUT (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain UTI89 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECOLI (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain K12) GN=msbA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL6 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6 GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECOL5 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ECO57 (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli O157:H7 GN=msbA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+H+ LL++   G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR--GVYAQLHKMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSAR 322
            A ++   I+LLDE+TSALDAES + VQEALD    G+TTIV+AH LSTIRNA VI  I  G   E G+H  L+     G Y  +++ Q  +H Q+  +    + S R
Sbjct:  666 AVIKNPNILLLDESTSALDAESTKLVQEALDVLMKGRTTIVIAHNLSTIRNADVIIYIKKGVAVERGTHDELMAK--QGLYFDLVEKQ--SHQQMYNLLENGTRSRR 768          

HSP 2 Score: 80.8777 bits (198), Expect = 3.279e-15
Identity = 41/84 (48.81%), Postives = 60/84 (71.43%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A +R  +I+LLDE+TSALDA+S + VQEAL+    G+TTIV+AH L TI+NA  IA +  G++ E G+H  LL+   +G Y+++
Sbjct: 1344 AIIRNPKILLLDESTSALDADSTKLVQEALENVMKGRTTIVIAHNLLTIQNADCIAYVRAGQIIERGTHDELLE--AEGPYSQL 1425          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_YERPS (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pseudotuberculosis GN=msbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R   I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I VI+DG++ E G H+ LL     G YA++ ++Q
Sbjct:  494 ALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQ--QGVYAQLNRMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_YERPN (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R   I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I VI+DG++ E G H+ LL     G YA++ ++Q
Sbjct:  494 ALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQ--QGVYAQLNRMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_YERPE (Lipid A export ATP-binding/permease protein msbA OS=Yersinia pestis GN=msbA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R   I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I VI+DG++ E G H+ LL     G YA++ ++Q
Sbjct:  494 ALLRNCPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVIEDGRIVERGVHAELLVQ--QGVYAQLNRMQ 579          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MSBA_SHEDO5.976e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOUT5.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOLI5.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOL65.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOL55.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECO575.976e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB3_DICDI5.976e-1745.79ABC transporter B family member 3 OS=Dictyostelium... [more]
MSBA_YERPS7.805e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_YERPN7.805e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_YERPE7.805e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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