FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_RAT (ATP-binding cassette sub-family B member 8, mitochondrial OS=Rattus norvegicus GN=Abcb8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +++  +++LDEATSALDAESER VQEALDRA +G+T +V+AHRLST+R AH I V+ +G+V E G+H  LL+    G YA +I+ Q
Sbjct:  607 ALIKRPTVLILDEATSALDAESERIVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCEAGTHEELLQKG--GLYAELIRRQ 692          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_MOUSE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus musculus GN=Abcb8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +++  +++LDEATSALDAESER VQEALDRA +G+T +V+AHRLST+R AH I V+ +G+V E G+H  LLK    G Y+ +I+ Q
Sbjct:  607 ALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCEAGTHEELLKKG--GLYSELIRRQ 692          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.422e-20
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A VR+  I+LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I VI++GKV E G+H  LL     G Y  M+Q
Sbjct: 1187 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLAQK--GIYFSMVQ 1270          

HSP 2 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA VIA  D G + E G+H  L++    G Y +++  Q
Sbjct:  543 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK--GIYFKLVMTQ 628          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_CAEEL (Multidrug resistance protein 1 OS=Caenorhabditis elegans GN=pgp-1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 4.422e-20
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT---HSQVIGMTSGSSSSARPKDDEE 340
            A VR  +I+LLDEATSALDAESE  VQ+ALD+A  G+TTI++AHRLSTIRNA +I    +G+V E+G H  L+     G Y  ++  Q FT    S   G  S  +S AR   + E
Sbjct:  568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ--QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHE 681          

HSP 2 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE+ VQEALDRA  G+T IV+AHRL+T+ NA  IAV+ +G + E G+H+ L+     G Y ++ Q Q
Sbjct: 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEK--GAYYKLTQKQ 1316          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB7B_ARATH (ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.422e-20
Identity = 48/88 (54.55%), Postives = 69/88 (78.41%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++  +I+LLDEATSALDAESER VQ+AL +    +TT+VVAHRL+TIR A +IAV+  GKV E G+H  ++K +P+G Y+++++LQ
Sbjct:  509 AILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIK-DPEGTYSQLVRLQ 595          

HSP 2 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 44/85 (51.76%), Postives = 64/85 (75.29%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256
            A ++  +I+LLDEATSALDAESER VQ+ALD+    +TT+VVAH L+TI++A +IAV+ +G +AE G H  L++ +  G YA ++
Sbjct: 1158 AILKDPKILLLDEATSALDAESERVVQDALDQVMVNRTTVVVAHLLTTIKDADMIAVVKNGVIAESGRHETLMEIS-GGAYASLV 1241          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB13B_ARATH (ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.422e-20
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ--------RFTHSQVIGMTSGSSSSAR 322
            A +R  +I+LLDEATSALDAESE+ VQ+ALD     +TTIVVAHRLSTIRN   I V+ DG+V E GSHS L+    D  YA ++  Q        R   S+     +GSSSS R
Sbjct:  523 AVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGD--YATLVNCQETEPQENSRSIMSETCKSQAGSSSSRR 635          

HSP 2 Score: 90.5077 bits (223), Expect = 4.139e-18
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   ++LLDEATSALD  SE+ VQEALD+   G+TT++VAHRLSTIR A  +AV+  G+V E GSH  L+ + P+G Y ++  LQ
Sbjct: 1156 AVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELV-SIPNGFYKQLTSLQ 1242          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR3_MOUSE (Multidrug resistance protein 3 OS=Mus musculus GN=Abcb1a PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 5.775e-20
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR+  I+LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I VI +GKV E G+H  LL     G Y  M+ +Q
Sbjct: 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVSVQ 1270          

HSP 2 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA VIA  D G + E G+H  L++    G Y +++  Q
Sbjct:  540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK--GIYFKLVMTQ 625          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_CRIGR (Multidrug resistance protein 1 OS=Cricetulus griseus GN=ABCB1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 5.775e-20
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR+  I+LLDEATSALD ESE+ VQEALD+A  G+T IV+AHRLSTI+NA +I VI +GKV E G+H  LL     G Y  M+ +Q
Sbjct: 1186 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK--GIYFSMVSVQ 1271          

HSP 2 Score: 95.5153 bits (236), Expect = 1.287e-19
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSS 316
            A VR  +I+LLDEATSALD ESE  VQ ALD+A  G+TTIV+AHRLST+RNA +IA  D G + E G+H  L++    G Y +++  Q   +   +G   G S +
Sbjct:  541 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADIIAGFDGGVIVEQGNHEELMREK--GIYFKLVMTQTAGNEIELGNEVGESKN 643          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_DANRE (ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.775e-20
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A V+   I++LDEATSALDAESER VQEALDRA +G+T +++AHRLSTI+ A +I V+ +G++ E G+H  LL     G YA +I+ QR
Sbjct:  623 ALVKNPSILILDEATSALDAESERVVQEALDRATTGRTVLIIAHRLSTIQAADLICVMSNGRIVEAGTHLELLSKG--GLYAELIKRQR 709          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVU (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus GN=msbA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.287e-19
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESER++Q ALD     KT +V+AHRLSTI  A  I VIDDG V E GSHS L++   DG YA++ ++Q
Sbjct:  494 ALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGSVVERGSHSELIEK--DGAYAQLHRIQ 579          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
ABCB8_RAT1.985e-2055.68ATP-binding cassette sub-family B member 8, mitoch... [more]
ABCB8_MOUSE1.985e-2055.68ATP-binding cassette sub-family B member 8, mitoch... [more]
MDR1_MOUSE4.422e-2060.47Multidrug resistance protein 1 OS=Mus musculus GN=... [more]
MDR1_CAEEL4.422e-2049.14Multidrug resistance protein 1 OS=Caenorhabditis e... [more]
AB7B_ARATH4.422e-2054.55ABC transporter B family member 7 OS=Arabidopsis t... [more]
AB13B_ARATH4.422e-2051.30ABC transporter B family member 13 OS=Arabidopsis ... [more]
MDR3_MOUSE5.775e-2059.09Multidrug resistance protein 3 OS=Mus musculus GN=... [more]
MDR1_CRIGR5.775e-2059.09Multidrug resistance protein 1 OS=Cricetulus grise... [more]
ABCB8_DANRE5.775e-2055.06ATP-binding cassette sub-family B member 8, mitoch... [more]
MSBA_VIBVU1.287e-1955.68Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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