FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PHOPR (Lipid A export ATP-binding/permease protein msbA OS=Photobacterium profundum GN=msbA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 44/88 (50.00%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESER++Q AL+     +T +V+AHRLSTI  A  I V+DDG++ E G+H  L+K+  DG YA++ ++Q
Sbjct:  497 ALLRNAPVLILDEATSALDTESERAIQSALEELQKDRTVLVIAHRLSTIEGADQILVVDDGEIIERGTHGELIKH--DGAYAQLHRIQ 582          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BORA1 (Lipid A export ATP-binding/permease protein msbA OS=Bordetella avium (strain 197N) GN=msbA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEATSALD ESER VQ +LDR   G+TT+V+AHRLST++NA  I V+D G++ E G+H+ LL     G YA +  +Q
Sbjct:  502 ALIKNAPILILDEATSALDNESERQVQSSLDRLMRGRTTLVIAHRLSTVQNADRIIVLDAGRIVEHGAHTELLA--AGGLYATLYNMQ 587          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB4_DICDI (ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++  +I++LDEATSALD++SE  VQ ALD    G+TT+V+AHRLST++NA +I V+  GK+AE G+H+ L+  N  G Y +++Q Q
Sbjct:  676 AILKNPQIIILDEATSALDSQSELLVQTALDNLMKGRTTLVIAHRLSTVQNADLIGVLSHGKIAEFGNHNELM--NHKGLYYKLVQRQ 761          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   I+LLDEATSALDAESE  V++A+D     +T IV+AHRLST+ NA+ + VI+ GK+ E+G+H  LL NN DG Y  +++ Q
Sbjct:  818 AMIQNPMILLLDEATSALDAESEYLVKQAIDEIMKDRTVIVIAHRLSTVINANTVVVINQGKIEEMGTHKELL-NNTDGIYHNLVKRQ 904          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEU2 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msbA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A +++LDEATSALD ESER +Q ALD    G+TT+V+AHRLSTI  A +I V+D G++ E G+H+ LL  N  G YAR+
Sbjct:  505 ALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADLILVMDAGQIVERGTHTELLAQN--GYYARL 586          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSE14 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msbA PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A +++LDEATSALD ESER +Q ALD    G+TT+V+AHRLSTI  A +I V+D G++ E G+H+ LL  N  G YAR+
Sbjct:  505 ALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGQIVERGTHTELLAQN--GYYARL 586          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB27B_ARATH (ABC transporter B family member 27 OS=Arabidopsis thaliana GN=ABCB27 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQV 286
            A +    ++LLDEATSALDAESE  VQ+A+D   +G+T +V+AHRLST++ A  +AVI DG+VAE G+H  LL  N  G Y  +++ Q  + S V
Sbjct:  549 ALLTNPSVLLLDEATSALDAESEYLVQDAMDSLMAGRTVLVIAHRLSTVKTADCVAVISDGEVAEKGTHDELLSLN--GIYTNLVKRQLQSSSSV 641          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ALHEH (Lipid A export ATP-binding/permease protein msbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=msbA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.139e-18
Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEATSALD+ESE+ +QEAL++   G+TT+V+AHRLSTI +A  I V+D G+V E G+H  LL +N  G YA + ++Q
Sbjct:  499 ALLKDAPILILDEATSALDSESEKRIQEALEKLMRGRTTLVIAHRLSTIEDADRIVVLDAGRVVETGTHRELLDHN--GHYASLHRVQ 584          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURS3 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia sp. (strain 383) GN=msbA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+R   G+TT+V+AHRLSTI  A  I V++ GK+ E GSH  LL++   G YA + ++Q
Sbjct:  502 AIYKDAPILILDEATSALDSESERHVQAALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGSHDELLRHG--GLYAHLHRIQ 587          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURCA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia cenocepacia (strain AU 1054) GN=msbA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+R   G+TT+V+AHRLSTI  A  I V++ GK+ E GSH  LL++   G YA + ++Q
Sbjct:  502 AIYKDAPILILDEATSALDSESERHVQAALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGSHDELLRHG--GLYAHLHRIQ 587          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MSBA_PHOPR2.426e-1850.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORA12.426e-1852.27Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB4_DICDI2.426e-1850.00ABC transporter B family member 4 OS=Dictyostelium... [more]
ABCB1_DICDI2.426e-1851.14ABC transporter B family member 1 OS=Dictyostelium... [more]
MSBA_PSEU23.169e-1853.57Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSE143.169e-1853.57Lipid A export ATP-binding/permease protein msbA O... [more]
AB27B_ARATH3.169e-1849.47ABC transporter B family member 27 OS=Arabidopsis ... [more]
MSBA_ALHEH4.139e-1852.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURS35.405e-1853.41Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURCA5.405e-1853.41Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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