FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMC5 (Seryl-tRNA synthetase OS=Campylobacter curvus (strain 525.92) GN=serS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 78/234 (33.33%), Postives = 126/234 (53.85%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E+ ++  K V NP  F+F  K H++LG+ L   DF+  A++SGS+F  L+ EA  L   L+N+ +     RGF  +  P +V S+ +   G  P+  +  +Y +   D  LI T+E+PV  I+ D I+   +LP+K   +S CF             + R HQF K+E+    +PE+S+   +E++    DL +SLGL  + + + + DLG  A +  D+E W+P   +Y EIS
Sbjct:  118 EEDNVCIKKVLNPREFSFTPKAHYELGEQLGWLDFERGAKISGSRFTILRGEAARLSRALVNYMIDFNSARGFELVNVPFLVNSNTLYGTGQLPKFED-DLYKVRDEDLYLIPTSEVPVTNIYNDEIIDAEILPIKMTCYSACFRQEAGSAGRDTRGMIRQHQFEKVELVSITKPEQSEQILDEMVACASDLLASLGLPHRHMLLCSGDLGFSAAKTIDLEVWLPSQNKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ANASK (Seryl-tRNA synthetase OS=Anaeromyxobacter sp. (strain K) GN=serS PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 75/234 (32.05%), Postives = 122/234 (52.14%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E  +++ +T G    + F  K H++LG+AL + ++  AA++SGS+F  LK  A  LE  ++++ +     RG+T +  P +V    +   G  P+       +       LI TAE+PV  +H D I   S +P+ Y AFS CF             + R HQF K+E+    + EES++ HE+++    ++   LGLHF+ V +   D+G  + + +D+E W PG G Y EIS
Sbjct:  120 EHDNVVVRTWGEQKAYGFTPKPHWELGEALGVLEWQQAAKLSGSRFTILKGAAARLERAIVSFFIDVHTSRGYTEILPPYLVTGETMTGTGQLPKFEEDLFKTTNEPPMYLIPTAEVPVTNMHRDEIFEASAMPVSYCAFSPCFRAEAGSAGRDTRGIMRQHQFHKVELVKLSKAEESEAEHEKMLDDACEVLRRLGLHFRVVLLCAGDMGFSSAKTYDIEVWCPGQGAYREIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METI4 (Seryl-tRNA synthetase OS=Methylacidiphilum infernorum (isolate V4) GN=serS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.525e-34
Identity = 80/239 (33.47%), Postives = 129/239 (53.97%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GG + + + KT G P   NFP+K H++LG+ L I D +  A++SGS F         L+  LI + L+    + G+  L  P +V    +   G  P+ A   +Y+ +  +  LI T E+P+   H D IL+ES LPL+Y A++ CF             L R+HQF K+E+    +PE S +  EE++   E++  SL L ++ V +A++D+G  A + +D+E W PG+  + E+S
Sbjct:  114 PTGGPEANKVVKTWGEPRQANFPLKTHWELGRELGILDLERGAKLSGSGFSLFTGNGAKLQRALIQFMLTIHTEEHGYKELWPPYLVTEDCMRGTGHLPKFA-LDMYATDKDNLYLIPTGEVPLTNFHRDEILAESSLPLRYVAYTPCFRREAGSAGKDTRGLLRLHQFDKVELVQITKPENSYTALEEMVSHAENILRSLNLCYRVVLLASQDMGFGAAKCYDLEVWSPGIQSWLEVS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_EXIS2 (Seryl-tRNA synthetase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=serS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.525e-34
Identity = 84/240 (35.00%), Postives = 126/240 (52.50%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G  ED +++ + VG+   F+F    H+ L + L I D + A +V+GS+F + +     LE  LIN+ +     K G+T +  P +V    +   G  P+      + +E  +  L+ TAE+PV  +H D ILS   LP+ YAA+S CF             L R HQF+K+E+  F +PEES    E L    E++   L L ++ + M T DLG  A +K+D+E WMP  G Y EIS
Sbjct:  113 PIGSTEDDNVVIREVGDKPAFDFEAVPHWDLMEQLKIVDVERAGKVTGSRFVFYRGAGARLERALINFMMDLHQDKNGYTEILPPLMVNRDSMTGTGQLPK-FEEDAFKVEDTNYFLVPTAEVPVTNMHRDEILSADQLPIGYAAYSQCFRSEAGSAGRDTRGLIRQHQFNKVELVRFVKPEESYEQLELLTGQAEEVLKLLKLPYQVLSMCTADLGFTAAKKYDIEVWMPSQGVYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLOBA (Seryl-tRNA synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=serS PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.525e-34
Identity = 80/228 (35.09%), Postives = 122/228 (53.51%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K  G P+ F F  K H+ LG  L+I DF+   +V+GS+F   K     LE  +IN+ L +   + G+T +  P +V    +   G  P+      + +E     LI TAE+PV  ++ + +LS  +LP+K+AA+S CF             L R HQF+K+E+  FC+PE+S +  ++L+   E +   LGL ++ V +   DLG  A  K+D+E WMP   RY EIS
Sbjct:  127 KKWGEPTKFTFEPKAHWDLGTDLNILDFERGGKVAGSRFTVYKGLGARLERSIINYFLDKHTTENGYTEILPPYMVNRDSMTGTGQLPK-FEEDAFKVENNGYFLIPTAEVPVTNMYRNEVLSGDILPIKHAAYSACFRAEAGSAGRDTRGLVRQHQFNKVELVKFCKPEDSYAELDKLVEDAESVLQGLGLPYRIVRICKGDLGFTAALKYDIEVWMPSYNRYVEIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SYNFM (Seryl-tRNA synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=serS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 85/240 (35.42%), Postives = 130/240 (54.17%), Query Frame = 1
Query:    1 PVGGEDC-SIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG ++  + + KT G+    +F  K H+++G+AL I DF+ AA+++G++F         LE  LI + L    KR G+T +  P IV S+ +   G  P+     ++ +E  D  L+ TAE+PV  IHM+  L ES LP  Y AF+ CF             L R HQF+K+E+    +PE S    E+L+   E +   LGLH++ V + T D+G  + + +D+E W+PG   Y EIS
Sbjct:  112 PVGADEKDNPVAKTWGSKPELDFEPKPHWEIGEALGILDFERAAKIAGARFALYWKMGAALERALIAFMLDIHTKRHGYTEVLPPFIVNSTSLLGTGQLPK-FKEDLFKLEDRDFYLVPTAEVPVTNIHMNETLEESELPKLYTAFTPCFRSEAGSYGKDTRGLIRQHQFNKVELVKLVKPESSYEELEKLLLDAERILQELGLHYRVVTLCTGDMGFSSAKTYDIEVWLPGQNTYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_GEOTN (Seryl-tRNA synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=serS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 85/240 (35.42%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ ++  +  G P  F+F  K H+ +   L + DF+ AA+V+GS+F + K     LE  LIN+ L   + + G+  +  P +V  + +   G  P+ A    + ++  D  LI TAE+PV  +H D IL+   LPL YAA+S CF             L R HQF+K+E+  F +PE+S    E+L    E +   LGL ++ V + T DLG  A + +D+E W+P  G Y EIS
Sbjct:  113 PVGQSEEDNVEVRRWGEPRSFSFEPKPHWDIADQLGLLDFERAAKVAGSRFVFYKGLGARLERALINFMLDIHLDEFGYQEVLPPYLVNRASMIGTGQLPKFAE-DAFHLDNEDYFLIPTAEVPVTNLHRDEILTADDLPLYYAAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYDELEKLTHQAETILQRLGLPYRVVALCTGDLGFSAAKTYDIEVWLPSYGTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_GEOSW (Seryl-tRNA synthetase OS=Geobacillus sp. (strain WCH70) GN=serS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 86/240 (35.83%), Postives = 127/240 (52.92%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ ++  +  G P  F+F  K H+ + + L I DF+ AA+V+GS+F + K     LE  LIN+ L   I+  G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV  +H D ILS   LP+ Y A+S CF             L R HQF+K+E+  F +PE+S    E+L    E +   LGL ++ V + T DLG  + + +D+E W+P  G Y EIS
Sbjct:  113 PVGKSEEDNVEVRKWGEPRSFSFEPKPHWDIAEQLGILDFERAAKVTGSRFVFYKGLGARLERALINFMLDVHIEEFGYQEILPPYLVNRASMTGTGQLPK-FEEDAFRIETDDYFLIPTAEVPVTNLHRDEILSAEDLPIYYVAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYDELEKLTNQAERILQLLGLPYRVVCLCTGDLGFSSAKTYDIEVWLPSYGTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS1_LACPL (Seryl-tRNA synthetase 1 OS=Lactobacillus plantarum GN=serS1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 82/240 (34.17%), Postives = 131/240 (54.58%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  +  G+   F+F  K H++LG++L I DFD AA+V+G++F Y K+   +LE  + ++ L     K+G+  +  P +V +  +   G  P+     VY++E +   LI TAE+P+   + + ILSE  LP  + A + C+             L R+HQF K+EM  +C+PE S    E+L    E++   LGL +  + ++T D G  + + +DVE WMP  G Y EIS
Sbjct:  113 PVGPDEDSNVEMRKHGDIPTFDFKPKAHWELGESLGILDFDRAAKVAGARFVYYKDAGALLERAVYSFMLDLHTQKQGYHEIIPPYLVNAQTMYGTGQFPK-FKEDVYTVESSGMTLIPTAEVPLTNYYANEILSEDQLPTYFTAMTPCYRSEAGSAGRDTRGLIRMHQFHKVEMVKYCKPENSYDELEKLTDNAEEVLRELGLAYHVIKLSTGDTGFSSAKTYDVEVWMPEQGVYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_KOSOT (Seryl-tRNA synthetase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=serS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 82/240 (34.17%), Postives = 127/240 (52.92%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ +++ +  G P  F+F    H+ LG  L + DF+ AA++SGS+F  L+ E   LE  LIN+ L     + G+  +  P +V+   ++  G  P+    + Y  +  D  LI TAE+P+   H D IL+ + LP KY A++ C+             + RVHQF K+E+  F  P+ES    E+L    E++   LGL ++ V + T DLG  A + +D+E W+P    Y EIS
Sbjct:  115 PVGESEEDNVVVRKWGEPRQFDFDSLAHWDLGPNLGMMDFERAAKLSGSRFVILRKELARLERALINFMLDLHTREHGYEEVALPHLVKRETMQATGQLPK-FEEEAYKTDPDDMFLIPTAEVPLVAQHRDEILNLNELPRKYTAYTPCYRREAGSYGKDVKGMIRVHQFDKVELVWFVHPDESYEALEKLTADAEEVLKRLGLPYRVVALCTGDLGFAAAKTYDIEVWLPSYNAYKEIS 353          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_CAMC52.653e-3433.33Seryl-tRNA synthetase OS=Campylobacter curvus (str... [more]
SYS_ANASK3.465e-3432.05Seryl-tRNA synthetase OS=Anaeromyxobacter sp. (str... [more]
SYS_METI44.525e-3433.47Seryl-tRNA synthetase OS=Methylacidiphilum inferno... [more]
SYS_EXIS24.525e-3435.00Seryl-tRNA synthetase OS=Exiguobacterium sibiricum... [more]
SYS_CLOBA4.525e-3435.09Seryl-tRNA synthetase OS=Clostridium botulinum (st... [more]
SYS_SYNFM5.910e-3435.42Seryl-tRNA synthetase OS=Syntrophobacter fumaroxid... [more]
SYS_GEOTN5.910e-3435.42Seryl-tRNA synthetase OS=Geobacillus thermodenitri... [more]
SYS_GEOSW5.910e-3435.83Seryl-tRNA synthetase OS=Geobacillus sp. (strain W... [more]
SYS1_LACPL5.910e-3434.17Seryl-tRNA synthetase 1 OS=Lactobacillus plantarum... [more]
SYS_KOSOT7.719e-3434.17Seryl-tRNA synthetase OS=Kosmotoga olearia (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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