FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ELUMP (Seryl-tRNA synthetase OS=Elusimicrobium minutum (strain Pei191) GN=serS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 83/235 (35.32%), Postives = 127/235 (54.04%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD-QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            +D   IRK    PS F+F   DH  +G+ L I DF+ AA +SGS+F  LK +   LE  LI++ L +  K+G+T +  P IV   ++   G  P+     +Y++EG   Q LI TAEIP+  ++   +L E+ LP+K  A + CF             L R HQF K+E+ +     +S +  E +    ED+   LGL ++TV++ T D+G  + + +D+E WMP   +Y EIS
Sbjct:  121 KDNKEIRKDGAAPS-FSFKPLDHHAVGEKLGILDFETAAVLSGSRFALLKGDGARLERALISYMLDKHAKKGYTEVVPPSIVNEEILIGTGQLPK-FREDMYALEGEPKQFLISTAEIPLTNMNRGKVLQEAELPVKLTAGTPCFRKEAGTYGKDTRGLIRNHQFDKVELVMISNSNDSFNLLEAMTADAEDVLKGLGLAYRTVELCTGDMGFSSAKTYDIEVWMPSENKYREIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CHLSY (Seryl-tRNA synthetase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=serS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 72/217 (33.18%), Postives = 124/217 (57.14%), Query Frame = 1
Query:   64 FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            FP + H++LG+AL I DF+   +++GS+FY ++     L+  +I W +   +++G+  + TP +V+ SV+   G  P+  +  +Y  E +   L+ TAE+P+  ++ D IL  S LP+ + A++ CF             + R HQF K+EM++F  P++S    E+L R  E+    LGL F+T  + T DLG  + + +D+E W PG+G + E+S
Sbjct:  134 FPARPHWELGEALGIIDFERGVKLAGSRFYVMRGAGARLQRAVIQWLIDLHLEQGYQEVYTPFVVKESVLWASGQLPKFRDN-LYRDEESGLWLVPTAEVPLTSLYADEILDASQLPIYHVAYTPCFRKEQLSAGRDVRGIKRGHQFDKVEMYMFVTPDQSYQALEKLRRDAEECARRLGLPFRTKLLCTGDLGFGSTKTYDIEVWAPGVGEWLEVS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CHLAA (Seryl-tRNA synthetase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=serS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 72/217 (33.18%), Postives = 124/217 (57.14%), Query Frame = 1
Query:   64 FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            FP + H++LG+AL I DF+   +++GS+FY ++     L+  +I W +   +++G+  + TP +V+ SV+   G  P+  +  +Y  E +   L+ TAE+P+  ++ D IL  S LP+ + A++ CF             + R HQF K+EM++F  P++S    E+L R  E+    LGL F+T  + T DLG  + + +D+E W PG+G + E+S
Sbjct:  134 FPARPHWELGEALGIIDFERGVKLAGSRFYVMRGAGARLQRAVIQWLIDLHLEQGYQEVYTPFVVKESVLWASGQLPKFRDN-LYRDEESGLWLVPTAEVPLTSLYADEILDASQLPIYHVAYTPCFRKEQLSAGRDVRGIKRGHQFDKVEMYMFVTPDQSYQALEKLRRDAEECARRLGLPFRTKLLCTGDLGFGSTKTYDIEVWAPGVGEWLEVS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMFF (Seryl-tRNA synthetase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=serS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 79/239 (33.05%), Postives = 126/239 (52.72%), Query Frame = 1
Query:    1 PVGGEDC-SIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G +D  ++  KT+  P  FNF  K+HF+LG+ L   DF   A++SGS+F  L+++   L   L+N+ +     RGF  +  P +V S+ +   G  P+     +Y I   D  LI T+E+PV  I+ + I+    LP+K   +S CF             + R HQF K+E+    +PE+S    +E++    D+   LGL  + + + + DLG  A +  D+E W+PG G+Y EIS
Sbjct:  113 PLGKDDNDNVCIKTILEPREFNFTPKEHFELGENLGWLDFATGAKLSGSRFTVLRSDGARLSRALVNFMIDFNTARGFELVNVPFLVNSNTLYGTGQLPK-FEEDLYKIRDEDLYLIPTSEVPVTNIYNNEIIPVENLPIKMTCYSACFRQEAGSAGRDTRGMIRQHQFEKVELVSISKPEDSAKILDEMVSCASDMLKELGLPHRHMMLCSADLGFGAAKTIDLEVWLPGQGKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMC1 (Seryl-tRNA synthetase OS=Campylobacter concisus (strain 13826) GN=serS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 77/234 (32.91%), Postives = 127/234 (54.27%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E+ ++  KTV  P+ F+F  K+H++LG++L   DF+  A++SGS+F  L+     L   L+N+ +     RGF  +  P +V S+ +   G  P+     +Y +   D  LI T+E+PV  ++ D+I+    LP+K   +S CF             + R HQF K+E+    +P++S+    E+I    DL +SLGL  + + + + DLG  A +  D+E W+PG G+Y EIS
Sbjct:  118 ENDNVCIKTVLEPTKFDFKPKEHWELGESLGWLDFERGAKLSGSRFTVLRGMGARLGRALVNYMIDFNSARGFELVNVPYLVSSNTLFGTGQLPK-FEEDLYKVRDEDLYLIPTSEVPVTNLYNDTIIEAEQLPIKMTCYSACFRQEAGSAGRDTRGMIRQHQFEKVELVSITKPDQSEGVLAEMISCASDLLTSLGLPHRHMLLCSGDLGFSAAKTIDLEVWLPGQGKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BACLD (Seryl-tRNA synthetase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=serS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.933e-33
Identity = 86/240 (35.83%), Postives = 124/240 (51.67%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  +  G    F+F  K H+ +   LDI DF+ A +V+GS+F + K     LE  L N+ L   V + G+T +  P +V  + +   G  P+      + I   D  LI TAE+P+  +H D ILS   LP+ YAAFS CF             L R HQF+K+E+  F +PE+S    E+L    E +   L L ++ + M T DLG  A +K+D+E W+P    Y EIS
Sbjct:  113 PVGETEDDNVEVRKWGELPEFSFEPKPHWDIADQLDILDFERAGKVTGSRFVFYKGLGARLERALYNFMLDLHVDEYGYTEVIPPYMVNRASMTGTGQLPK-FEEDAFKIREEDYFLIPTAEVPITNLHRDEILSADELPINYAAFSACFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYEELEKLTNQAEKVLQLLELPYRVMSMCTGDLGFTAAKKYDIEVWIPSQNTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PARL1 (Seryl-tRNA synthetase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=serS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.831e-33
Identity = 81/246 (32.93%), Postives = 133/246 (54.07%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA---DQ---CLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E  ++IR + G     NF  K+HF LG+AL + DF+AAA++SG++F  LK +   LE  + N+ +     + G+  +  P +VR   +      P+  + Q  + +G    DQ    LI TAE+P+  +  +SILSE  LP ++ A++ CF             + R HQFSK+E+     PE+S   HE ++   E++   L LH++ + ++T D+G  + + +D+E W+PG   + EIS
Sbjct:  114 PVGPDESANVIRHSHGKAREMNFAPKEHFDLGEALGLMDFEAAAKMSGARFTVLKGQLARLERAIGNFMVDLHTTEFGYEEVAPPLMVRDDAMFGTAQLPKFEDDQFATFKGLARDDQEKYWLIPTAEVPLTNLVRESILSEEELPKRFTAYTACFRAEAGSAGRDTRGMIRQHQFSKVELVSITTPEKSREEHERMLSCAEEVLKRLDLHYRVMTLSTGDMGFASRKTYDIEVWLPGQNAFREIS 359          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LISMH (Seryl-tRNA synthetase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=serS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.831e-33
Identity = 87/240 (36.25%), Postives = 125/240 (52.08%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  +  G    F+F  K H+ LG  LDI DF+ AA+V+GS+F + K     LE  LIN+ +     + G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV   H + IL    LP KY AFS CF             L R HQF+K+E+  F +PE+S +  E+L    E++   L L ++ + M T DLG  A +K+D+E W+P    Y EIS
Sbjct:  113 PVGESEDDNVEIRKWGEVREFDFEPKAHWDLGTDLDILDFENAAKVTGSRFVFYKKLGARLERALINFMMDLHSNEHGYEEMLPPYMVNRASMTGTGQLPK-FEEDAFLIEAEDYFLIPTAEVPVTNYHREDILKAEDLPRKYTAFSACFRSEAGSAGRDTRGLIRQHQFNKVELVQFVKPEDSYAALEKLTGNAEEVLRRLELPYRVLSMCTADLGFTAAKKYDLEVWIPSYNSYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LISMF (Seryl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=serS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.831e-33
Identity = 87/240 (36.25%), Postives = 125/240 (52.08%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  +  G    F+F  K H+ LG  LDI DF+ AA+V+GS+F + K     LE  LIN+ +     + G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV   H + IL    LP KY AFS CF             L R HQF+K+E+  F +PE+S +  E+L    E++   L L ++ + M T DLG  A +K+D+E W+P    Y EIS
Sbjct:  113 PVGESEDDNVEIRKWGEVREFDFEPKAHWDLGTDLDILDFENAAKVTGSRFVFYKKLGARLERALINFMMDLHSNEHGYEEMLPPYMVNRASMTGTGQLPK-FEEDAFLIEAEDYFLIPTAEVPVTNYHREDILKAEDLPRKYTAFSACFRSEAGSAGRDTRGLIRQHQFNKVELVQFVKPEDSYAALEKLTGNAEEVLRRLELPYRVLSMCTADLGFTAAKKYDLEVWIPSYNSYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LISMC (Seryl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=serS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.831e-33
Identity = 87/240 (36.25%), Postives = 125/240 (52.08%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  +  G    F+F  K H+ LG  LDI DF+ AA+V+GS+F + K     LE  LIN+ +     + G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV   H + IL    LP KY AFS CF             L R HQF+K+E+  F +PE+S +  E+L    E++   L L ++ + M T DLG  A +K+D+E W+P    Y EIS
Sbjct:  113 PVGESEDDNVEIRKWGEVREFDFEPKAHWDLGTDLDILDFENAAKVTGSRFVFYKKLGARLERALINFMMDLHSNEHGYEEMLPPYMVNRASMTGTGQLPK-FEEDAFLIEAEDYFLIPTAEVPVTNYHREDILKAEDLPRKYTAFSACFRSEAGSAGRDTRGLIRQHQFNKVELVQFVKPEDSYAALEKLTGNAEEVLRRLELPYRVLSMCTADLGFTAAKKYDLEVWIPSYNSYREIS 351          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_ELUMP2.933e-3335.32Seryl-tRNA synthetase OS=Elusimicrobium minutum (s... [more]
SYS_CHLSY2.933e-3333.18Seryl-tRNA synthetase OS=Chloroflexus aurantiacus ... [more]
SYS_CHLAA2.933e-3333.18Seryl-tRNA synthetase OS=Chloroflexus aurantiacus ... [more]
SYS_CAMFF2.933e-3333.05Seryl-tRNA synthetase OS=Campylobacter fetus subsp... [more]
SYS_CAMC12.933e-3332.91Seryl-tRNA synthetase OS=Campylobacter concisus (s... [more]
SYS_BACLD2.933e-3335.83Seryl-tRNA synthetase OS=Bacillus licheniformis (s... [more]
SYS_PARL13.831e-3332.93Seryl-tRNA synthetase OS=Parvibaculum lavamentivor... [more]
SYS_LISMH3.831e-3336.25Seryl-tRNA synthetase OS=Listeria monocytogenes se... [more]
SYS_LISMF3.831e-3336.25Seryl-tRNA synthetase OS=Listeria monocytogenes se... [more]
SYS_LISMC3.831e-3336.25Seryl-tRNA synthetase OS=Listeria monocytogenes se... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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