FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NEIMB (Seryl-tRNA synthetase OS=Neisseria meningitidis serogroup B GN=serS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 78/245 (31.84%), Postives = 123/245 (50.20%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD-----QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ++   +  + VG P  F+F +KDH  LG+ L + DF+  A++SG++F  ++ +   L   L  + L +  ++ G+T   TP IV  + ++  G  P+ A    +   G D     Q LI TAE+ +     DSI+    LPLK  A S CF             L R HQF K+EM     PE+S    EE++   E++  +L L ++ + + T D+G  A + +D+E W+P    Y EIS
Sbjct:  114 PAGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGL-DFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSEQLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQIVHPEKSYETLEEMVGHAENILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREIS 357          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NEIM0 (Seryl-tRNA synthetase OS=Neisseria meningitidis serogroup C (strain 053442) GN=serS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 78/245 (31.84%), Postives = 123/245 (50.20%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD-----QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ++   +  + VG P  F+F +KDH  LG+ L + DF+  A++SG++F  ++ +   L   L  + L +  ++ G+T   TP IV  + ++  G  P+ A    +   G D     Q LI TAE+ +     DSI+    LPLK  A S CF             L R HQF K+EM     PE+S    EE++   E++  +L L ++ + + T D+G  A + +D+E W+P    Y EIS
Sbjct:  114 PAGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGL-DFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSEQLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQIVHPEKSYETLEEMVGHAENILKALELPYRVITLCTGDMGFGAAKTYDLEVWVPAQNTYREIS 357          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LACH4 (Seryl-tRNA synthetase OS=Lactobacillus helveticus (strain DPC 4571) GN=serS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 81/247 (32.79%), Postives = 125/247 (50.61%), Query Frame = 1
Query:    1 PVGGEDC--SIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-------EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G +D     +RK    P+ F+F  K H+ +G  L I D+D A++VSG++F Y      +LE  + N+ L E  K G+T +  P +V  + ++  G  P+  +  VY+I       +  D  LI TAE+P+     + I+ E+ LP+   A S  F             L R+H+F K+EM   C+P+ES    E+L    E L   LGL +  V ++T D    + R +D+E WMP   +Y EIS
Sbjct:  113 PIGPDDSYNEEVRKW-NEPTKFDFKPKAHWDIGTDLGILDWDRASKVSGARFVYYIGAGALLERAVFNFFLDENTKDGYTEVIPPYLVNDASMQGTGQFPK-FHEDVYTIVDNDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTALSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKVCKPDESWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSARTYDLEVWMPAQDKYREIS 357          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BACSK (Seryl-tRNA synthetase OS=Bacillus clausii (strain KSM-K16) GN=serS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 77/225 (34.22%), Postives = 116/225 (51.56%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G+   F+F  + H++LG ALDI DF+ AA+V+GS+F   K     LE  LIN+ +     +  +T +  P IV  + +   G  P+     V+ I   D  LI TAE+PV  +H   +L    LP+ Y A+S  F             L R HQF+K+E+  F  PE+S++  E +    E++   LGL ++ V + T DL   + + +D+E WMP    Y EIS
Sbjct:  128 GDVPDFSFEPRPHWELGTALDILDFERAAKVTGSRFTVYKGLGARLERALINFMMDMHATEHDYTEVLPPYIVNRASMIGTGQLPK-FEEDVFKISEEDYFLIPTAEVPVTNLHRGEVLQGEQLPIAYNAYSTNFRSEAGSAGRDTRGLIRQHQFNKVELVRFSLPEDSNNQLEIMTTHAENVLKRLGLPYRVVTLCTGDLTFASTKTYDLEVWMPSANTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THICR (Seryl-tRNA synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 78/247 (31.58%), Postives = 117/247 (47.37%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--------GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  +  G P  F+F +KDH  L +A   +D DAA +++ S+F  LK     L+  L  + L      G+  +  P +V    +   G  P+     +Y I+          D  LI TAE+PV  +  D I+ E  LPLK+ A + CF             L R HQF K+EM     P++S    E L +  E +   L L ++ + + T D+G  A + +D+E W+PG   Y EIS
Sbjct:  112 PVGNSEDDNVEVRQWGTPKTFDFDIKDHVDLAEARGWYDNDAAVKIASSRFSVLKGPMAKLQRALTQFMLDSHTDAGYEEVYVPFLVNQDSLHGTGQLPK-FEADLYKIDKHEEHDTSDRDLYLIPTAEVPVTNLFRDEIIDEDTLPLKFTAHTPCFRSEAGSYGRDTKGLIRQHQFEKVEMVQIVHPDQSYEALESLTQQAESILQKLELPYRVMSLCTGDIGFSAAKTYDLEVWLPGQQAYREIS 357          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SHEDO (Seryl-tRNA synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 78/229 (34.06%), Postives = 117/229 (51.09%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+FPVKDH  LG+AL   DF +A +++GS+F  +K +   L   L  + L     + G+T    P +V    +   G  P+      +T+  + EG    LI TAE+P+  +  D+I+  S LPLK+ A + CF             L R HQF K+E+    +PE+S    EEL    E +   LGL ++T+ + T D+G  A + +D+E W+P    Y EIS
Sbjct:  127 GTPRSFDFPVKDHLDLGEALGGLDFKSAVKITGSRFIVMKGQLARLNRALGQFMLDLHTQEHGYTETYVPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDTIVEVSDLPLKFTAQTSCFRSEAGSYGRDTRGLIRQHQFEKVELVQIVKPEDSMQALEELTLHAEKVLQLLGLPYRTMLLCTGDMGFGASKTYDLEVWLPAQNTYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RICAH (Seryl-tRNA synthetase OS=Rickettsia akari (strain Hartford) GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 72/224 (32.14%), Postives = 116/224 (51.79%), Query Frame = 1
Query:   46 NPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            NP+  N   K HF+LG  L++ DF+  A++SG++F  LK +   LE  LIN+ +    K   F  ++ P +VR + +   G  P+ A     +  G    LI TAE+ +  I  D+I+    LP++Y A++ CF             + R+HQF K+E+     PEES   HE +    E +   L L ++ + + T D+G  A + +D+E W+PG  +Y EI+
Sbjct:  130 NPNALN---KQHFELGTKLNLMDFEQTAKISGARFVTLKGDLAKLERALINFMIDVHTKEFNFFEMSPPVLVRDNAMYNSGQLPKFAEESFATTNGYR--LIPTAEVFLVNIVADTIIPREKLPMRYVAYTPCFRSEAGSSGRDTRGMIRLHQFGKVELVSITTPEESKHEHEYITNSSETILQKLNLPYRVMLLCTGDMGFAAKKTYDIEVWLPGQKQYREIA 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RICAE (Seryl-tRNA synthetase OS=Rickettsia africae (strain ESF-5) GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 71/224 (31.70%), Postives = 117/224 (52.23%), Query Frame = 1
Query:   46 NPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            NP+  N   K HF+LG  L++ DF+  A++SG++F  LK +   LE  LIN+ +    K   F  ++ P +VR + +   G  P+ A     +  G    LI TAE+ +  +  D+I+    LP++Y A++ CF             + R+HQF K+E+     PEES + HE +    E +   L L ++ + + T D+G  A + +D+E W+PG  +Y EI+
Sbjct:  130 NPNALN---KQHFELGIKLNLMDFEQTAKISGTRFVTLKGDLAKLERALINFMIDVHTKEWDFFEISPPVLVRDNAMYNAGQLPKFAEESFATTNGYR--LIPTAEVSLVNMVADTIIPREKLPIRYVAYTPCFRSEAGSSGKDTRGMIRLHQFGKVELVSITTPEESTNEHEYITNASETILQKLNLPYRVMLLCTGDMGFAAKKTYDIEIWLPGQKQYREIA 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_OLICO (Seryl-tRNA synthetase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 77/251 (30.68%), Postives = 125/251 (49.80%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTV-GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYS----IEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGL-------GRYGEIS 714
            P G ++   ++  V G P  + F  K+H  LG+ L   DF+ AA++SG++F  LK+    LE  +  + L     + G+T +  P +VR   +      P+    Q  +     EG    LI TAE+P+  +  +SIL E  LP++  A + CF             + R HQF+K+E+     P+ES + HE ++   E++   LGLH++ + + T D+G  + + +D+E WMPG        G Y EIS
Sbjct:  114 PEGADEHGNVQHHVYGEPRSYAFKPKEHVALGEGLGFMDFERAAKLSGARFVVLKSGLARLERAIGQFFLDVHTGEHGYTEVNPPLLVRDDAMFGTAQLPKFREDQFAAGSLDAEGQGYWLIPTAEVPLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSITTPDESRNEHERMLSCAEEVLKRLGLHYRVMTLCTGDMGFASQKTYDIEVWMPGQISSQGEGGMYREIS 364          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NEIMF (Seryl-tRNA synthetase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 78/245 (31.84%), Postives = 123/245 (50.20%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD-----QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ++   +  + VG P  F+F +KDH  LG+ L + DF+  A++SG++F  ++ +   L   L  + L +  ++ G+T   TP IV  + ++  G  P+ A    +   G D     Q LI TAE+ +     DSI+    LPLK  A S CF             L R HQF K+EM     PE+S    EE++   E++  +L L ++ + + T D+G  A + +D+E W+P    Y EIS
Sbjct:  114 PFGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGL-DFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSEQLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQIVHPEKSYEALEEMVGHAENILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREIS 357          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_NEIMB4.383e-2931.84Seryl-tRNA synthetase OS=Neisseria meningitidis se... [more]
SYS_NEIM04.383e-2931.84Seryl-tRNA synthetase OS=Neisseria meningitidis se... [more]
SYS_LACH44.383e-2932.79Seryl-tRNA synthetase OS=Lactobacillus helveticus ... [more]
SYS_BACSK4.383e-2934.22Seryl-tRNA synthetase OS=Bacillus clausii (strain ... [more]
SYS_THICR5.725e-2931.58Seryl-tRNA synthetase OS=Thiomicrospira crunogena ... [more]
SYS_SHEDO5.725e-2934.06Seryl-tRNA synthetase OS=Shewanella denitrificans ... [more]
SYS_RICAH5.725e-2932.14Seryl-tRNA synthetase OS=Rickettsia akari (strain ... [more]
SYS_RICAE5.725e-2931.70Seryl-tRNA synthetase OS=Rickettsia africae (strai... [more]
SYS_OLICO5.725e-2930.68Seryl-tRNA synthetase OS=Oligotropha carboxidovora... [more]
SYS_NEIMF5.725e-2931.84Seryl-tRNA synthetase OS=Neisseria meningitidis se... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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