FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_GLUOX (Seryl-tRNA synthetase OS=Gluconobacter oxydans GN=serS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 75/236 (31.78%), Postives = 119/236 (50.42%), Query Frame = 1
Query:   10 GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            GED +++    G    F F  K HF+LG+AL + DF  AA++SG++F  L+     LE  L  + L +   + G++  + P +V    +      P+ A     + +G  + LI TAE+P+    M  IL    LP++  A S CF             + R HQF+K E+    +PE+SD+ HE + +  E +   LG+ F+ + +   D G  A + FD+EAW+PG   + EIS
Sbjct:  116 GEDENVVVHVRGEKREFAFEAKQHFELGEALGLMDFPTAAKLSGTRFVVLRGALARLERALGQFMLDTHTTEFGYSETSVPLLVNDDAMYGTDKLPKFAEDSFRTEDG--RWLIPTAEVPLTASVMGEILPADALPIRMTALSQCFRSEAGSAGRDVRGMLRQHQFTKCELVSVVKPEDSDAEHERMTQAAETVLERLGITFRRMLLCAGDTGFGAAKTFDLEAWLPGQKAWREIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLOK5 (Seryl-tRNA synthetase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=serS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 75/235 (31.91%), Postives = 119/235 (50.64%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED   IR+ +  P+ F F  K H+ +G  L+I DF+   +V+GS+F + +     LE  ++++ L     K G+  +  P +V  + +   G  P+      + +   D  LI TAE+PV   + + +L    LP+KY A+S CF             + R HQF+K+E+  F +PE+S    E+L    ED+   L + ++ V +   DLG  A  K+D+E WMP   RY EIS
Sbjct:  121 EDNVEIRRWM-EPTKFKFQPKAHWDIGTNLNILDFERGGKVAGSRFTFYRGLGARLERAIVSYYLDFHTEKHGYEEILPPYMVNRTSMIGTGQLPK-FEEDAFRVANNDFFLIPTAEVPVTNFYRNEVLKGEDLPIKYVAYSACFRAEAGSAGRDTRGIIRQHQFNKVELVKFAKPEQSYDELEKLTNDAEDVIKGLKIPYRVVKICKGDLGFTAALKYDIEVWMPSYNRYVEIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLOK1 (Seryl-tRNA synthetase OS=Clostridium kluyveri (strain NBRC 12016) GN=serS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 75/235 (31.91%), Postives = 119/235 (50.64%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED   IR+ +  P+ F F  K H+ +G  L+I DF+   +V+GS+F + +     LE  ++++ L     K G+  +  P +V  + +   G  P+      + +   D  LI TAE+PV   + + +L    LP+KY A+S CF             + R HQF+K+E+  F +PE+S    E+L    ED+   L + ++ V +   DLG  A  K+D+E WMP   RY EIS
Sbjct:  121 EDNVEIRRWM-EPTKFKFQPKAHWDIGTNLNILDFERGGKVAGSRFTFYRGLGARLERAIVSYYLDFHTEKHGYEEILPPYMVNRTSMIGTGQLPK-FEEDAFRVANNDFFLIPTAEVPVTNFYRNEVLKGEDLPIKYVAYSACFRAEAGSAGRDTRGIIRQHQFNKVELVKFAKPEQSYDELEKLTNDAEDVIKGLKIPYRVVKICKGDLGFTAALKYDIEVWMPSYNRYVEIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CHLT3 (Seryl-tRNA synthetase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=serS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 75/220 (34.09%), Postives = 115/220 (52.27%), Query Frame = 1
Query:   58 FNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            F+F  KDH +LGK+L + DF+  A+++G+ F     +   LE  LIN+ L   + K G+  +  P  V    +   G  P+ A+ QVY +   D   I TAE+PV  +H D +L    LP+KYAA+S CF               RVHQF+K+EM  F  PE S    E L+   ED+  +L + ++ + + + D+ A A + +D+E W P   ++ E S
Sbjct:  137 FDFKPKDHIELGKSLGMLDFERGAKIAGAGFPLYIGKGASLERALINFMLDLHLEKHGYKEVFPPFFVNRDSLRGTGQWPKFAD-QVYYMNDDDIYAIPTAEVPVTNMHRDEMLQSKELPIKYAAYSACFRREAGSYGKDTKGFLRVHQFNKVEMVKFVLPETSYDELEALLGDAEDVLKALEIPYRVLLLCSGDISANAAKCYDIEVWSPAEEKFLEAS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CHLPB (Seryl-tRNA synthetase OS=Chlorobium phaeobacteroides (strain BS1) GN=serS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 74/235 (31.49%), Postives = 121/235 (51.49%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E+  I +  V      +FP+ DH  LG  L I DF+  A++SG+ F     +   LE  L+N+ L       G+T +  P +V    +   G  P+ A+ QVY +   +   I TAE+PV  +H + +L +  LP+ YAA+S CF               RVHQF+K+EM  F +PEES    E++++  E + ++L + ++ + + + D+ A A + +D+E W P   +Y E S
Sbjct:  122 EENHICKDPVAFDHALDFPLMDHLDLGNKLGILDFERGAKISGTGFPVYIGKGARLERALLNFMLDCHTENHGYTEVFPPFMVNEDSLRGTGQWPKFAD-QVYYMNEDNLYAIPTAEVPVTNLHRNEMLKDEELPISYAAYSACFRREAGSYGKDTRGFLRVHQFNKIEMVKFTRPEESYDALEKILQNAEAILNALRIPYRVLLLCSGDISAGATKCYDIEVWSPAEKKYLEAS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BARBK (Seryl-tRNA synthetase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=serS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 75/235 (31.91%), Postives = 123/235 (52.34%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E+ +I+ +  G P  FNF  K+HF LG+ L   +F+ A+ +SG++F  L      LE  L  + L   V + G+  ++ P +VR  +V      P+ ++    + +G  + LI TAE+P+  +    +L ES LPL++++ + CF             + R HQF K+EM      E+S    E +    ED+   L L F+TV ++T D+G  + + +D+E W+PG G Y EIS
Sbjct:  119 EEANIVIRHFGTPPTFNFIPKEHFDLGQNLKQMNFERASRLSGARFTVLSGALARLERALGQFMLDVHVNEHGYEEISLPLLVRDEIVYGAAQLPKFSDDLFRTTDG--RWLISTAEVPLVNLVNGEVLHESDLPLRFSSLTPCFRSEAGAAGRDTRGMLRQHQFWKVEMVSITTEEQSLIELERMTECAEDVLKRLELPFRTVVLSTGDMGFASCKTYDIEVWLPGQGCYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHILW (Seryl-tRNA synthetase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=serS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.275e-28
Identity = 74/240 (30.83%), Postives = 125/240 (52.08%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E  +++ +TVG    +N   K+HF++G+AL   DF+ AA++SGS+F  L      LE  L  + +     + G+T +++P +VR+  +   G  P+       + +G  + LI TAE+ +  +  + IL +  LPL++ A +  F             + R HQF K E+      E + + HE +    ED+   LGLHF+T+ + T D+G  + + +D+E W+PG   + EIS
Sbjct:  114 PVGKDEHDNVVTRTVGEKPRWNHTPKEHFEIGEALGYMDFERAAKLSGSRFTVLTGPLARLERALGQFMIDLHTREHGYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTDG--RYLIPTAEVTLTNLVREEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESAVAEHERMTACAEDVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NEIMA (Seryl-tRNA synthetase OS=Neisseria meningitidis serogroup A GN=serS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.275e-28
Identity = 78/245 (31.84%), Postives = 122/245 (49.80%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD-----QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ++   +  + VG P  F+F +KDH  LG+ L + DF+  A++SG++F  ++ +   L   L  + L +  +K G+T   TP IV  + ++  G  P+ A    +   G D     Q LI TAE+ +      SI+    LPLK  A S CF             L R HQF K+EM     PE+S    EE++   E++  +L L ++ + + T D+G  A + +D+E W+P    Y EIS
Sbjct:  114 PFGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGL-DFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLKHGYTEHYTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDESKTTQYLIPTAEVTLTNTVAGSIIPSEQLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQIVHPEKSYETLEEMVGHAENILKALELPYRVITLCTGDMGFGATKTYDLEVWVPAQNTYREIS 357          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LACF3 (Seryl-tRNA synthetase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=serS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.275e-28
Identity = 72/234 (30.77%), Postives = 115/234 (49.15%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED +   + VG    F+F  K H+++G+ L I DF+ A +VSGS+F Y       LE  L N+ L E +K G+T +  P IV +  +   G  P+     VY + G D  LI TAE+P+       ++    LP+   A +  F             L R+HQF+K+EM  + + ++S    +++    E++   LGL +  + + T D+   A    D+E WMP   +Y E+S
Sbjct:  118 EDGAEELRKVGQARQFDFEPKHHWEIGENLGILDFERAGKVSGSRFVYYVGLGAQLERALYNFMLDEHMKEGYTEVLPPYIVNAHAMYGTGQFPK-FKQDVYQVNGEDMTLIPTAEVPLTNYFAGEVIPAEKLPVYVTALTPSFRSEAGSAGRDTRGLIRMHQFNKVEMVKYTKQDQSWEELDKMTANAENILQKLGLPYHVITLTTSDMSFTASETHDLELWMPAQNKYREVS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CYAP7 (Seryl-tRNA synthetase OS=Cyanothece sp. (strain PCC 7424) GN=serS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.275e-28
Identity = 68/239 (28.45%), Postives = 127/239 (53.14%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G ++   +  +  G+  +    V  H+++G+ L I DF+ A +V+ S+F  L      LE  LIN+ L   I+ G+  +  P ++ ++ ++  G  P+ +  + +     +  L  TAE+PV  ++ D+++    LP+K+ A++ CF             L R+HQF+K+E+     PE S++ HE L++  E +  +L L ++ +++ T DLG  A + +D+E W+P    Y EIS
Sbjct:  119 PLGKDETENVEIRRWGDEYLPKIKVLPHWEIGEKLGILDFERAVKVAQSRFVNLIGAGAALERALINFMLDRQIEAGYLEVMPPILINTTSLQGTGQLPKFSE-ESFKCSEDELWLAPTAEVPVTNLYRDNVIEGEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELVKLVHPETSEAEHEALVKDAEAILQALKLPYRVIELCTGDLGFGAAKCYDIEVWLPSSDTYREIS 356          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_GLUOX9.765e-2931.78Seryl-tRNA synthetase OS=Gluconobacter oxydans GN=... [more]
SYS_CLOK59.765e-2931.91Seryl-tRNA synthetase OS=Clostridium kluyveri (str... [more]
SYS_CLOK19.765e-2931.91Seryl-tRNA synthetase OS=Clostridium kluyveri (str... [more]
SYS_CHLT39.765e-2934.09Seryl-tRNA synthetase OS=Chloroherpeton thalassium... [more]
SYS_CHLPB9.765e-2931.49Seryl-tRNA synthetase OS=Chlorobium phaeobacteroid... [more]
SYS_BARBK9.765e-2931.91Seryl-tRNA synthetase OS=Bartonella bacilliformis ... [more]
SYS_RHILW1.275e-2830.83Seryl-tRNA synthetase OS=Rhizobium leguminosarum b... [more]
SYS_NEIMA1.275e-2831.84Seryl-tRNA synthetase OS=Neisseria meningitidis se... [more]
SYS_LACF31.275e-2830.77Seryl-tRNA synthetase OS=Lactobacillus fermentum (... [more]
SYS_CYAP71.275e-2828.45Seryl-tRNA synthetase OS=Cyanothece sp. (strain PC... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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