FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THELT (Seryl-tRNA synthetase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=serS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 74/225 (32.89%), Postives = 114/225 (50.67%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G+P  F++  + H+ LG +L + DFD AA++SGS+F  +      LE  L N+ L    K  G+T +  P IV+   +   G  P+    + Y IE  D  LI TAE+P+  +  + IL E  LPL Y A++ C+             + R HQF K+E+     PE S    E L+   E++   L L ++ + + + DLG  A + +D+E W+P    Y EIS
Sbjct:  130 GDPKKFDYNPQAHWDLGPSLGLMDFDRAAKLSGSRFTVMYGMFAKLERALTNFMLDMHTKEHGYTEVWLPHIVKRETMTITGQLPK-FEEEAYRIEADDLFLIPTAEVPLVALRSNEILEEKDLPLLYTAYTPCYRREAGSYGKDVRGMIRQHQFDKVELVWITTPERSFEDLETLVSHAEEVLRRLELPYRVIQLCSGDLGFGAAKTYDLEVWLPSYNSYKEIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SYNY3 (Seryl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=serS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 70/212 (33.02%), Postives = 112/212 (52.83%), Query Frame = 1
Query:   79 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            H+++G+ L I D +   +V+ S+F  L      LE  LIN+ L   I  G+  +  P +V S  +   G  P+ A  + +   G D  LI TAE+PV  ++ D +L    LP+K+ A++ CF             L R+HQF+K+E+    +PEES + H+ L+   E +  +L L ++ V++ T DLG  A + +D+E W+P    Y EIS
Sbjct:  148 HWEIGEKLGIIDSERGVKVAQSRFISLMKAGAALERALINFMLERHIGVGYQEIMPPILVNSDSLLGTGQLPKFAE-ESFQCRGDDLWLIPTAEVPVTNLYRDEVLDLEQLPIKHCAYTPCFRREAGSYGRDTKGLIRLHQFNKVELVKLVKPEESAAEHQALVADAEAILQALELPYRVVELCTGDLGFGAAKCYDLEVWLPSANTYREIS 358          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_STAS1 (Seryl-tRNA synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=serS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 73/240 (30.42%), Postives = 124/240 (51.67%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G  D   I  K  G P  F F  K H+ L + L++ DF+ AA+VSG++F +L  +   LE  L+N+ +++   + G+T +  P++V +  +   G  P+     ++ +E      I TAE+P+   + + I++  +LP K+ A S C+             L R+HQF K+EM    +PE+S    E++    E +   LGL ++ V + T D+G  + + +D+E W+P    Y EIS
Sbjct:  113 PEGATDEDNIEVKRWGTPRTFEFEDKAHWDLVEELEMVDFERAAKVSGARFVFLTGDGAQLERALMNYMITKHTTQHGYTEMMVPQLVNADSMYGTGQLPK-FEEDLFKVEKEGLYTIPTAEVPLTNYYRNEIIAPDVLPAKFTAQSACYRSEAGSAGRDTRGLIRLHQFDKVEMVRIEKPEDSWQALEDMTHHAEAILEELGLPYRRVILCTGDIGFGSSKTYDLEVWLPSYNDYKEIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_GLUDA (Seryl-tRNA synthetase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=serS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 75/235 (31.91%), Postives = 117/235 (49.79%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E  +++   VG    F FP ++HF LG+AL + DF+ A ++SG++F  L+     +E  L  + L   V + G+T    P +V  + +      P+ A+    + +G  + LI TAE+P+       IL  S LP +  A S CF             + R HQF K+EM     P +SD+ HE + R  E +   LG+ ++ + +   D G  A R FD+EAW+PG   + EIS
Sbjct:  117 ESANVVVHQVGERRDFAFPPREHFALGEALGLMDFETAGKLSGARFVVLRGALARMERALGQFMLDLHVQEHGYTETAVPVLVNEAAMFGTDKLPKFADQSFRTEDG--RWLIPTAEVPLTASVAGDILPASALPRRMVALSSCFRSEAGAAGRDTRGMLRQHQFQKVEMVSITAPGDSDAEHERMTRCAEKVLERLGIPYRRMLLCAGDTGFGAARTFDLEAWLPGQDAWREIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_AGRT5 (Seryl-tRNA synthetase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=serS PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 71/235 (30.21%), Postives = 121/235 (51.49%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E  +++ +  G    +N   K+HF++G+AL   DF+ AA++SGS+F  L ++   LE  L  + +     + G+T +++P +VR   +   G  P+ A     + +G  + LI TAE+ +  +    IL +  LPL++ A +  F             + R HQF K E+      E + + HE +    E++   LGLHF+T+ + T D+G  A + +D+E W+PG   Y EIS
Sbjct:  119 EHDNVVARVTGQKPGWNHAAKEHFEIGEALGYMDFERAAKLSGSRFTVLTSQLARLERALGQFMIDLHTSEHGYTEVSSPLMVRDEAMFGTGQLPKFAEDLFRTTDG--RWLIPTAEVTLTNLVSGEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESAVAEHERMTACAEEVLKRLGLHFRTLTLCTGDMGFSARKTYDLEVWLPGQNTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SHESH (Seryl-tRNA synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=serS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 76/244 (31.15%), Postives = 121/244 (49.59%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ++   +  +  G P  FNF VKDH +LG+ L   DF AA +++G++F  +K +   +   L  + L     + G+T    P +V    +   G  P+      +T+  + EG    LI TAE+P+  I  D+I+ E+ LP+K  A + CF             L R HQF K+E+    +PE+S +  + L    E +   L L ++TV + T D+G  + + FD+E W+P    Y EIS
Sbjct:  112 PAGADESENVEVRRWGTPKEFNFEVKDHVELGETLGGLDFKAAVKITGTRFIIMKGQIARMNRALAQFMLDLHTTEHGYTEAYVPLLVNEESLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNIARDTIIDEADLPVKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQLVKPEDSMAALDSLTGHAETVLQKLELPYRTVVLCTGDMGFGSSKTFDIEVWLPAQNTYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SHELP (Seryl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=serS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 76/244 (31.15%), Postives = 121/244 (49.59%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G ++   +  +  G P  F+F VKDH  LG+     DF +A +++GS+F  +K +   +   L  + L     + G+T    P +V    +   G  P+      +T+  + EG    LI TAE+P+  +  D+I+ E  LP+K  A + CF             L R HQF K+E+    +PE+S +  E L +  E +   LGL ++TV + T D+G  A + FD+E W+P    Y EIS
Sbjct:  112 PIGADENDNVEIRRWGEPKQFDFDVKDHVDLGEQHAGLDFKSAVKITGSRFIVMKGQIARMHRALTQFMLDLHTTEHGYTETYVPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLARDTIIDEDELPIKMTAHTACFRSEAGSYGRDTRGLIRQHQFDKVELVQLVKPEDSMAALESLTQHAETVLQRLGLPYRTVVLCTGDMGFGAAKTFDIEVWLPAQNTYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PELPD (Seryl-tRNA synthetase OS=Pelobacter propionicus (strain DSM 2379) GN=serS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 74/246 (30.08%), Postives = 124/246 (50.41%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEISVHQLYG 732
            PVG  E+ ++  +  G P  + F  K H+++G+ L I DF+  A+++G++F   +     +E  LI++ L       G+  +  P +V    +   G  P+     ++ +   +  LI TAE+PV  IH   IL +S LP++YAA++ CF             L R HQF+K+E+  F  P +S    E+L    E +   L L ++ + + + D+G  A R +D+E W+PG   Y EIS    +G
Sbjct:  111 PVGKSENDNVEIRKWGTPGSYGFTPKPHWEIGEELGILDFECGAKLTGARFTLSRGAGARMERALISFMLDLHTASHGYLEVLPPFMVNRDSMTGTGQLPK-FEEDLFKMTDPEYFLIPTAEVPVTNIHRGEILKKSDLPIRYAAYTPCFRREAGSYGKDTRGLIRQHQFNKVELVKFSHPSQSAEELEKLTADAEKVLQLLELPYRVMALCSADIGFSAARTYDLEVWLPGQNCYREISSCSCFG 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METEP (Seryl-tRNA synthetase OS=Methylobacterium extorquens (strain PA1) GN=serS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 70/215 (32.56%), Postives = 115/215 (53.49%), Query Frame = 1
Query:   73 KDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            + HF+LG+A  + DF+AAA++SGS+F  LK +   LE  L  + L     + G+T +  P +VR   +      P+  + Q  +  G +  LI TAE+P+  +  +SIL+E  LPL++ A + CF             + R HQF+K+E+     PE+S   HE ++   E +   L L ++ + + T D+G  + + +D+E W+PG   Y EIS
Sbjct:  139 RQHFELGEATGLMDFEAAAKLSGSRFVVLKGQLARLERALGQFMLDLHTGEHGYTEVVPPVLVREEAMFGTAQLPKFRDDQFAA--GENFWLIPTAEVPLTNLVRESILAEDELPLRFTALTPCFRAEAGAAGRDTRGMLRQHQFNKVELVSITAPEKSAEEHERMLACAEAVLQKLDLTYRVMTLCTGDMGFASQKTYDIEVWVPGQQTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METC4 (Seryl-tRNA synthetase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=serS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 70/215 (32.56%), Postives = 115/215 (53.49%), Query Frame = 1
Query:   73 KDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            + HF+LG+A  + DF+AAA++SGS+F  LK +   LE  L  + L     + G+T +  P +VR   +      P+  + Q  +  G +  LI TAE+P+  +  +SIL+E  LPL++ A + CF             + R HQF+K+E+     PE+S   HE ++   E +   L L ++ + + T D+G  + + +D+E W+PG   Y EIS
Sbjct:  139 RQHFELGEATGLMDFEAAAKLSGSRFVVLKGQLARLERALGQFMLDLHTGEHGYTEVVPPVLVREEAMFGTAQLPKFRDDQFAA--GENFWLIPTAEVPLTNLVRESILAEDELPLRFTALTPCFRAEAGAAGRDTRGMLRQHQFNKVELVSITAPEKSAEEHERMLACAEAVLQKLDLTYRVMTLCTGDMGFASQKTYDIEVWVPGQQTYREIS 351          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_THELT1.666e-2832.89Seryl-tRNA synthetase OS=Thermotoga lettingae (str... [more]
SYS_SYNY31.666e-2833.02Seryl-tRNA synthetase OS=Synechocystis sp. (strain... [more]
SYS_STAS11.666e-2830.42Seryl-tRNA synthetase OS=Staphylococcus saprophyti... [more]
SYS_GLUDA1.666e-2831.91Seryl-tRNA synthetase OS=Gluconacetobacter diazotr... [more]
SYS_AGRT51.666e-2830.21Seryl-tRNA synthetase OS=Agrobacterium tumefaciens... [more]
SYS_SHESH2.175e-2831.15Seryl-tRNA synthetase OS=Shewanella sediminis (str... [more]
SYS_SHELP2.175e-2831.15Seryl-tRNA synthetase OS=Shewanella loihica (strai... [more]
SYS_PELPD2.175e-2830.08Seryl-tRNA synthetase OS=Pelobacter propionicus (s... [more]
SYS_METEP2.175e-2832.56Seryl-tRNA synthetase OS=Methylobacterium extorque... [more]
SYS_METC42.175e-2832.56Seryl-tRNA synthetase OS=Methylobacterium chlorome... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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