FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METBF (Seryl-tRNA synthetase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=serS1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 74/239 (30.96%), Postives = 122/239 (51.05%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ + + + VG P  F F  K H+++G+ALDI DF+  A++SG  F   K     LE  L+N+ L    ++G+  +  P ++    +   G  P+  +      +G    L  TAE+PV  + MD  + +  LP+   A++ CF             + R HQF+K+E+  F +PE S    E+L    E++   L L ++ V++ T D+G  A + +D+E W+P   +Y EIS
Sbjct:  113 PVGKDENDNPVVRIVGEPRKFTFTPKPHWEIGEALDILDFEKGAKISGQGFTVYKGMGAKLERALVNFMLEVHARQGYLEVFPPVLINEKAMTGTGQLPKFKDDMYLCTDG--YYLAPTAEVPVTNLFMDDYIEK--LPVFLTAYTACFRREAGKHGQDTRGIIRQHQFNKVELVKFVKPETSYDELEKLTNDAEEILKLLKLPYRVVNLCTGDIGFSAAKTYDLEVWVPTQEKYREIS 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_GEOSF (Seryl-tRNA synthetase OS=Geobacter sp. (strain FRC-32) GN=serS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 77/240 (32.08%), Postives = 121/240 (50.42%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTV-GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  +   +   V G     +F  K H+++G+ LDI DF+  A+++G++F   K     LE  L+N+ L     +  +  +  P +V    +   G  P+  +  ++ +   D  LI TAE+PV  IH   IL  S LPL Y A++ CF             L R HQF+K+E+  F  P  S +  ++L+   E++   L L ++ V++ T D+G  A R FD+E W+PG   Y EIS
Sbjct:  111 PVGASEADNVEIRVWGEKPHLDFTPKPHWEIGEDLDILDFERGAKLTGARFTLYKGLGARLERALVNFMLDLHTGRHNYLEMLPPFMVNRESMTGTGQLPKFED-DLFHLGEVDYFLIPTAEVPVTNIHRGEILKGSELPLCYTAYTPCFRKEAGSYGKDTRGLIRQHQFNKVELVKFVHPGHSYAELDKLLDNAEEVLRLLKLPYRVVELCTGDIGFSAARTFDIEVWLPGQDCYREIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYSC_CAEEL (Probable seryl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=srs-2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 70/224 (31.25%), Postives = 114/224 (50.89%), Query Frame = 1
Query:   79 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA-----------DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSY--HEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            H  L   +D FD +    V+G + Y+LK   V LE  +I   L  +  +G+ PL TP  +R  V+++   Q    + ++Y +              ++ LI T+E P+   H +  + E+ LP+KYA  S CF             ++RVHQF K+E FV C P +++S+   +E+I   E  Y  L + ++ V++ + +L   A +KFD+EAW PG G Y E+
Sbjct:  170 HVDLVVMVDGFDGERGTVVAGGRGYFLKGPLVFLEQAIIQLALQRLNVKGYVPLYTPFFMRKEVMQEVA-QLSQFDDELYKVSSKGSEIAGDTSVDEKYLIATSEQPIAAYHRNEWIKETELPIKYAGVSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVLCSPNDNESWTLFDEMIGNAESYYQELQIPYQVVNIVSGELNNAAAKKFDLEAWFPGSGAYREL 392          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RALSO (Seryl-tRNA synthetase OS=Ralstonia solanacearum GN=serS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 80/238 (33.61%), Postives = 117/238 (49.16%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPR------------GANTQVYSIEGADQC-LIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+FPVKDH  LG  L + DFD AA++SGS+F  LK     L   L  + L +   + G+T    P IV ++ +   G  P+            G  T+  + E  +   LI TAE+P+  +  D I++   LP+K+AA S CF             + R HQF K+EM    QPE S    + +    E++   L L F+TV + T D+G  + + +D+E W+P    Y EIS
Sbjct:  127 GTPRAFDFPVKDHVDLGAGLGL-DFDVAAKLSGSRFAVLKGPVARLHRALAQFMLDTHTQEHGYTEAYVPYIVNAASMRGTGQLPKFEEDLFRVPRKMGQATEAEAGEHVENFYLIPTAEVPLTNLVRDEIVAGDALPMKFAAHSPCFRSEAGSYGKDTRGMIRQHQFDKVEMVQIVQPETSFEALDAMTHHAENILRKLELPFRTVVLCTGDMGFGSTKTYDIEVWIPAQNTYREIS 363          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ORITB (Seryl-tRNA synthetase OS=Orientia tsutsugamushi (strain Boryong) GN=serS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 74/234 (31.62%), Postives = 120/234 (51.28%), Query Frame = 1
Query:   16 DCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            D + + K  G      FP K H+++GK L + DF+ A ++SGS+F  LK++   LE  LIN+ +     +  F  ++ P +V+   +   G  P+ A+    +  G    LI TAE+P+  I  ++ L E  LP++  AF+ CF             + R+HQF K+E+F    PEES+   E L    E +   L L ++ V + + D+G  A++ +D+E W+P    Y EIS
Sbjct:  119 DMNKVLKECGTIQNIKFP-KHHYEIGKNLGMIDFNTATKMSGSRFVILKHDLAKLERALINFMIDVHTTEFNFFEVSPPCLVKDHAMYNVGQLPKFADASFETTTGYR--LIPTAEVPLTNIFANTTLLEEKLPIRLVAFTPCFRSEVGSAGKDVKGMLRMHQFGKVELFTIATPEESNREFEYLTTAAETILKKLCLPYRVVLLCSGDIGFAAHKTYDLEVWLPAQNCYREIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NEIG1 (Seryl-tRNA synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=serS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 75/233 (32.19%), Postives = 118/233 (50.64%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD-----QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            + VG P  F+F +KDH  LG+ L + DF+  A++SG++F  ++ +   L   L  + L + +++ G+T   TP IV  + ++  G  P+ A    +   G D     Q LI TAE+ +      SI+    LPLK  A S CF             L R HQF K+EM     PE+S    EE++   E++  +L L ++ + + T D+G  A + +D+E W+P    Y EIS
Sbjct:  126 RKVGTPREFDFEIKDHVDLGEPLGL-DFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHMLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVAGSIIPSEQLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQIVHPEKSYGALEEMVGHAENILKALELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREIS 357          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MICAN (Seryl-tRNA synthetase OS=Microcystis aeruginosa (strain NIES-843) GN=serS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 68/212 (32.08%), Postives = 111/212 (52.36%), Query Frame = 1
Query:   79 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            H+++G+ L I DF+ A +++ S+F  L      LE  LIN+ L   I  G+T +  P ++ S  +   G  P+ A  + +     +  L  TAE+PV  ++ D ILS   LP+K+ A++ CF             L R+HQF+K+EM     P+ S   HE L+   E +  +L L ++ +++ + DLG  A + +D+E W+P    Y EIS
Sbjct:  145 HWEIGEKLGILDFERAVKIAQSRFVNLIALGAALERALINFMLDRHIVAGYTEVLPPILINSDSLRGTGQLPKFAE-ESFKCRDDELWLAPTAEVPVTNLYRDEILSSEQLPIKHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVEMVKIVHPDASAQEHESLVANAEAILQALQLPYRVIELCSGDLGFSAAKCYDLEVWLPSANTYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ACICJ (Seryl-tRNA synthetase OS=Acidiphilium cryptum (strain JF-5) GN=serS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 73/235 (31.06%), Postives = 120/235 (51.06%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E  ++ +K VG P  F+F  + HF+LG+AL + DF  AA+++G++F  L+ +   LE  L  + L   V + G+T ++ P +V  + +   G  P+ A     + +G  + LI TAE+P+  +    IL  + LPL+  A +  F             + R HQF K+E+     PE S   HE +    E +   LGL ++ + +   D G  + + +D+E W+PG G Y EIS
Sbjct:  124 ETANVEQKRVGAPPSFDFEARQHFELGEALGLMDFAGAAKLAGARFTVLRGDLARLERALGQFMLDLHVNEHGYTEVSPPLLVNDATMYGTGQLPKFAEDLFRTTDG--RWLIPTAEVPLTNLAAGEILDAASLPLRMTALTPSFRSEAGSAGRDTRGMLRQHQFWKVELVSLTTPEASADEHERMTSCAESVLERLGLPYRRMLLCAGDTGFSSAKTYDLEVWLPGQGAYREIS 356          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SILST (Seryl-tRNA synthetase OS=Silicibacter sp. (strain TM1040) GN=serS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28
Identity = 70/235 (29.79%), Postives = 116/235 (49.36%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED ++  K  G+   F+F  K+HF++       DF+ AA++SGS+F  LK     +   L  + + + V + G T + +P +VR   +      P+       +  G    L+ T+E+P+       ++ E+ LP++Y A + CF             + R HQF K+EM     PE SD   + ++   E +   LG+ ++TV + T D+G  A R +D+EAW+PG   Y EIS
Sbjct:  119 EDDNVEVKRWGDVPAFDFDPKEHFEIAGVAKAMDFETAAKISGSRFVVLKGAVARIHRALAQFMVDTHVDENGLTEVNSPVLVRDEAMYGTDKLPKFGEDSYQTTNG--WWLVPTSEVPLTYSVAGDVIDEAALPIRYTAHTLCFRSEAGSAGKDTSGMLRQHQFEKVEMVSIVHPETSDEEQKRMLGCAEGILEKLGIPYRTVVLCTGDMGFGARRTYDIEAWVPGQNTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NEIG2 (Seryl-tRNA synthetase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=serS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28
Identity = 75/233 (32.19%), Postives = 117/233 (50.21%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD-----QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            + VG P  F+F +KDH  LG+ L + DF+  A++SG++F  ++ +   L   L  + L +  ++ G+T   TP IV  + ++  G  P+ A    +   G D     Q LI TAE+ +      SI+    LPLK  A S CF             L R HQF K+EM     PE+S    EE++   E++  +L L ++ + + T D+G  A + +D+E W+P    Y EIS
Sbjct:  126 RKVGTPREFDFEIKDHVDLGEPLGL-DFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVAGSIIPSEQLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQIVHPEKSYGALEEMVGHAENILKALELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREIS 357          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_METBF2.175e-2830.96Seryl-tRNA synthetase OS=Methanosarcina barkeri (s... [more]
SYS_GEOSF2.175e-2832.08Seryl-tRNA synthetase OS=Geobacter sp. (strain FRC... [more]
SYSC_CAEEL2.175e-2831.25Probable seryl-tRNA synthetase, cytoplasmic OS=Cae... [more]
SYS_RALSO2.841e-2833.61Seryl-tRNA synthetase OS=Ralstonia solanacearum GN... [more]
SYS_ORITB2.841e-2831.62Seryl-tRNA synthetase OS=Orientia tsutsugamushi (s... [more]
SYS_NEIG12.841e-2832.19Seryl-tRNA synthetase OS=Neisseria gonorrhoeae (st... [more]
SYS_MICAN2.841e-2832.08Seryl-tRNA synthetase OS=Microcystis aeruginosa (s... [more]
SYS_ACICJ2.841e-2831.06Seryl-tRNA synthetase OS=Acidiphilium cryptum (str... [more]
SYS_SILST3.711e-2829.79Seryl-tRNA synthetase OS=Silicibacter sp. (strain ... [more]
SYS_NEIG23.711e-2832.19Seryl-tRNA synthetase OS=Neisseria gonorrhoeae (st... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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