FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BEII9 (Seryl-tRNA synthetase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=serS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28
Identity = 73/236 (30.93%), Postives = 117/236 (49.58%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPR--------GANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            + VG   VF+F  K+HF +G+ L + DF+AAA++SG++F   K     LE  L  + L     + G+T +  P + R   +      P+         A        G    LI T+E+ +  +  ++IL E  LPL++ A + CF             + R HQF+K E+     PEE+   HE ++   E++   LGL ++ V + T D+G  + + +D+E W+PG GRY EIS
Sbjct:  126 RVVGEKPVFSFVPKEHFDIGEGLGLMDFEAAAKLSGARFVVNKGPLARLERALGQFMLDLHTGEHGYTEVNPPILARDDALFGTAQLPKLEEDMFAAHAGRVPQEAAGDLYWLIPTSEVVLTNLVRETILDEKQLPLRFTACTPCFRAEAGSAGRDTRGMIRQHQFTKTELVSITTPEEALVEHERMLTCAEEVLKRLGLAYRVVTLCTGDMGFASQKTYDIEVWLPGQGRYREIS 361          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS2_LACPL (Seryl-tRNA synthetase 2 OS=Lactobacillus plantarum GN=serS2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.711e-28
Identity = 73/234 (31.20%), Postives = 114/234 (48.72%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E+ ++  + +G P  F+F  K H+ +G+ L I DF+  A+VSGS+F Y   +   LE  + N+ L +    G+T +  P +V    +   G  P+      + I   D  LI TAE+P+   + D ++    LP+ + A S  F             L R+HQF+K+EM  F +PE+S    E+L    E L   LGL +  + + T D+   A    D+E W P   +Y EIS
Sbjct:  118 EEDAVELRRIGTPRHFDFTPKAHWDIGEDLGILDFERGAKVSGSRFLYYVGDGAKLERAVYNFFLDQHEAEGYTEVLPPYMVTDESMYGTGQFPK-FKEDAFRITTQDLTLIPTAEVPLVNYYRDEVIPAEKLPVYFTALSPAFREEAGSAGRDTKGLIRLHQFNKVEMVKFTKPEDSWDELEKLTNNAESLLKKLGLPYHVITLTTGDMSFTAAMTHDLEVWFPEQDKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEEB (Seryl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=serS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 69/223 (30.94%), Postives = 117/223 (52.47%), Query Frame = 1
Query:   64 FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEISVHQLYG 732
            +P + H+ +G  L ++D + + +V+ S+F  L      LE  LI + L    +RG+  +  P +V ++ +   G  P+ A  + +     D  LI TAE+PV  ++ D IL+   LP+ + A++ CF             L R+HQF+K+E+  F  PE S + HE L+   E +  +L L ++ +++ T DLG  A + +D+E W+P  G Y EIS    +G
Sbjct:  139 YPCQPHWDIGTRLGLWDVERSVKVAQSRFVTLLGLGAALERALIQFMLDSHRERGYVEVLPPLLVNTASLTGTGQLPKFAE-ESFRCADDDLWLIPTAEVPVTNLYRDEILAADQLPIYHCAYTPCFRREAGSYGKDTRGLIRLHQFNKVELVKFVHPETSAAEHEALVADAEFILQALKLPYRVIELCTGDLGFAAMKCYDLEVWLPAAGCYREISSCSNFG 360          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_HALLT (Seryl-tRNA synthetase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=serS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 80/240 (33.33%), Postives = 121/240 (50.42%), Query Frame = 1
Query:    1 PVGGEDC-SIIRKTVGNPSVFNFP--VKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA--------DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMP 687
            PVG ++  ++ R+  G   +   P  V+ H+ LG+ L+I DF+  A+V+G  FY  K +   LE  LI + L    ++ +  +  P  V S+ +   G  P+      Y IEG         D  L+ TAE+PV  +H D IL    LPLKY A++  F             + RVHQF+K+EM  F +PEES    E L+   E++   L L ++ ++M T DLG    +K+D+E W P
Sbjct:  114 PVGADESENVERRREGFDDLREVPDNVEPHYDLGEELEILDFERGAKVAGGGFYVAKGDGARLEHALIQFMLDVHREQDYRDVFPPIAVNSTSMRGTGQLPKFTE-DAYRIEGTNEDAYDDDDLWLLPTAEVPVTNLHRDEILLGEDLPLKYQAYTPNFRQEAGEHGTETRGIVRVHQFNKVEMVNFVRPEESHERFEGLVDEAEEVLRRLELPYRILEMCTGDLGFTQAKKYDLEVWAP 352          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_DESAD (Seryl-tRNA synthetase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=serS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 70/235 (29.79%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED + + +  G    F+F  ++H+ L   L   DF+ AA+++G++F  LK     LE  L ++ +  + +  G+T +  P IV    +   G  P+     ++ ++  +  +I TAE+P+  +H D +LSE  L + Y A + CF             L R HQF K+EM  F  P++S    E++    E++   LGLH++ + + T D+G  + + +D+E W+PG  +Y EIS
Sbjct:  117 EDDNPVIRHWGEKPEFDFTPREHWDLAVELGGVDFERAAKLTGARFVVLKKWGARLERALTSFMVDVQTMDHGYTEVIPPYIVNRDSLFGTGQLPK-FEEDLFKLKNWEYYMIPTAEVPLTNLHRDEVLSEDDLSIAYCAPTPCFRSEAGSYGKDTKGLIRQHQFHKVEMVRFAHPDKSFEDLEKMTGHAEEILKRLGLHYRVITLCTGDMGFGSAKTYDIEVWLPGQDKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BARHE (Seryl-tRNA synthetase OS=Bartonella henselae GN=serS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 75/235 (31.91%), Postives = 122/235 (51.91%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E  +++ +    P+ F+F  K+HF LG+ L   DF+ A+ +SG++F  L      LE  L  + L   V + G+T ++ P +VR   V      P+ A+    + +G  + LI TAE+P+  +  + IL  S LPL++++ + CF             + R HQF K+EM      E+S    E +    ED+   L L F+T+ ++T D+G  A + +D+E W+PG G Y EIS
Sbjct:  119 ESDNVVLRHFSVPTTFDFTPKEHFDLGQNLKQMDFERASRLSGTRFTVLSGALARLERALGQFMLDVHVYEHGYTEVSVPLLVRDESVYGAAQLPKFADDLFRTTDG--RWLISTAEVPLTNLVNNEILEISDLPLRFSSLTPCFRSEAGSAGRDTRGMLRQHQFWKVEMVSITTAEQSLIELERMTECAEDVLKRLDLPFRTMVLSTGDMGFAARKTYDIEVWLPGQGCYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ACIBC (Seryl-tRNA synthetase OS=Acinetobacter baumannii (strain ACICU) GN=serS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 74/226 (32.74%), Postives = 114/226 (50.44%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQC-LIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+F +KDH  LG+ +   +F+ A +++GS+F  LK     L+  L  + L +  +K G+T    P +V +  +   G  P+     ++ ++G  +  LI TAE+PV     D I+    LPLKYAA + CF             L R HQF K+EM    +PE S    EEL    E +  +LGL ++ + +   D+G  A + +D+E W+P    Y EIS
Sbjct:  127 GTPRQFDFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTEAYVPYLVNADSLRGTGQLPK-FEEDLFKLQGEKEYYLIPTAEVPVTNFVRDEIIDADRLPLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQIVKPETSMQALEELTAHAEGILQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ACIB5 (Seryl-tRNA synthetase OS=Acinetobacter baumannii (strain AB0057) GN=serS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 74/226 (32.74%), Postives = 114/226 (50.44%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQC-LIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+F +KDH  LG+ +   +F+ A +++GS+F  LK     L+  L  + L +  +K G+T    P +V +  +   G  P+     ++ ++G  +  LI TAE+PV     D I+    LPLKYAA + CF             L R HQF K+EM    +PE S    EEL    E +  +LGL ++ + +   D+G  A + +D+E W+P    Y EIS
Sbjct:  127 GTPRQFDFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTEAYVPYLVNADSLRGTGQLPK-FEEDLFKLQGEKEYYLIPTAEVPVTNFVRDEIIDADRLPLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQIVKPETSMQALEELTAHAEGILQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ACIB3 (Seryl-tRNA synthetase OS=Acinetobacter baumannii (strain AB307-0294) GN=serS PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 74/226 (32.74%), Postives = 114/226 (50.44%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQC-LIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+F +KDH  LG+ +   +F+ A +++GS+F  LK     L+  L  + L +  +K G+T    P +V +  +   G  P+     ++ ++G  +  LI TAE+PV     D I+    LPLKYAA + CF             L R HQF K+EM    +PE S    EEL    E +  +LGL ++ + +   D+G  A + +D+E W+P    Y EIS
Sbjct:  127 GTPRQFDFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTEAYVPYLVNADSLRGTGQLPK-FEEDLFKLQGEKEYYLIPTAEVPVTNFVRDEIIDADRLPLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQIVKPETSMQALEELTAHAEGILQALGLPYRKILLCGGDMGFGATKTYDLEVWVPSQNTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_WOLPM (Seryl-tRNA synthetase OS=Wolbachia pipientis wMel GN=serS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 69/240 (28.75%), Postives = 126/240 (52.50%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G ++ S +  +  G    F+F  + H++LG+ L + DF+ AA +SGS+F  LK +   L   LIN  L   V + G+T +  P +V++  +   G  P+ ++    + +  +  LI T+E+ +  +  D I+ E  LP+++ A+S CF             + R HQF K+E+      ++S+   E +  + E++   L L ++ + + + D+G  A R +D+E W+PG  +Y EIS
Sbjct:  113 PIGADENSNLEVRRYGGKRQFDFVPESHYELGEKLGLMDFEQAARISGSRFTILKGQLAKLGRALINCMLEMHVNEFGYTEVYHPALVKNEAMYNVGQLPKFSDDSYLTTD--ELRLIPTSEVFLTNLVADKIMEEKELPIRFTAYSECFRKEAGSAGRDTRGMIRQHQFGKVELVSITTEDQSNDELERMTSVAEEILKKLELPYRVMLLCSGDMGFAAQRTYDIEVWLPGQNKYREIS 350          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_BEII93.711e-2830.93Seryl-tRNA synthetase OS=Beijerinckia indica subsp... [more]
SYS2_LACPL3.711e-2831.20Seryl-tRNA synthetase 2 OS=Lactobacillus plantarum... [more]
SYS_THEEB4.846e-2830.94Seryl-tRNA synthetase OS=Thermosynechococcus elong... [more]
SYS_HALLT4.846e-2833.33Seryl-tRNA synthetase OS=Halorubrum lacusprofundi ... [more]
SYS_DESAD4.846e-2829.79Seryl-tRNA synthetase OS=Desulfovibrio salexigens ... [more]
SYS_BARHE4.846e-2831.91Seryl-tRNA synthetase OS=Bartonella henselae GN=se... [more]
SYS_ACIBC4.846e-2832.74Seryl-tRNA synthetase OS=Acinetobacter baumannii (... [more]
SYS_ACIB54.846e-2832.74Seryl-tRNA synthetase OS=Acinetobacter baumannii (... [more]
SYS_ACIB34.846e-2832.74Seryl-tRNA synthetase OS=Acinetobacter baumannii (... [more]
SYS_WOLPM6.329e-2828.75Seryl-tRNA synthetase OS=Wolbachia pipientis wMel ... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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