FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHIL3 (Seryl-tRNA synthetase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=serS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 74/240 (30.83%), Postives = 123/240 (51.25%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E  +I+ +TVG    +N   K+HF++G+AL   DF+ AA++SGS+F  L      LE  L  + +     + G+  +++P +VR   V      P+ A     + +G  + LI TAE+ +  +  + IL +  LPL++ A +  F             + R HQF K E+      E + + HE +    E++   LGLHF+T+ + T D+G  + + +D+E W+PG   + EIS
Sbjct:  114 PVGKDEHDNIVTRTVGEKPRWNHAPKEHFEIGEALGYMDFERAAKLSGSRFTVLTGPLARLERALGQFMIDLHTSEHGYIEVSSPLMVRDEAVYGTAQLPKFAEDLFRTTDG--RWLIPTAEVTLTNLVREEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESAVAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PSEPF (Seryl-tRNA synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=serS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 78/243 (32.10%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI--EG-ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  +  G P+ F+FPV+DH  LG+     DF+ AA++SG++F  L+     L   L  + ++  V + G+    TP +V++  ++  G  P+     ++ I  EG AD  LI TAE+ +  I    I+    LP+K+ A + CF             + R HQF K+EM    +P +S    E L    E +   LGL ++T+ + T D+G  A + +D+E W+P   +Y EIS
Sbjct:  112 PVGEDEDGNVEVRRWGTPTAFDFPVQDHVALGEKFGWLDFETAAKLSGARFALLRGPIARLHRALAQFMINLHVTEHGYEEAYTPYLVQAPALQGTGQLPK-FEEDLFKIAREGEADLYLIPTAEVSLTNIVAGEIVDSKQLPIKFVAHTPCFRSEAGASGRDTRGMIRQHQFDKVEMVQIVEPSKSMEALESLTANAEKVLQLLGLPYRTLALCTGDMGFSAVKTYDLEVWIPSQDKYREIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PROVI (Seryl-tRNA synthetase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=serS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 78/241 (32.37%), Postives = 122/241 (50.62%), Query Frame = 1
Query:    1 PVG--GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG   E+  +  + V      +F +K+H +LGK+L I DF+  A+VSG+ F     +   LE  LIN+ L S   K G+  +  P +V    +   G  P+ A  +VY     +  LI TAE+PV  +H   +L    LP+ YAA+S CF               RVHQF+K+EM  F +PE+S    E++    E +  +L + ++ + + + D+ A A + +D+E W P   +Y E S
Sbjct:  116 PVGRSAEENEVFGEPVSFTHPLDFSLKNHLELGKSLGILDFERGAKVSGAGFPVYVGKGARLERALINFMLDSHTEKHGYKEVFPPFMVNRESLRGTGQWPKFAG-EVYHAPEDELYLIPTAEVPVTNLHRGELLETESLPISYAAYSACFRREAGSYGKETRGFLRVHQFNKVEMVKFTKPEDSYQALEDIRGHAEAILRALEIPYRVLLLCSGDISANAAKCYDIEVWSPAEEKYLEAS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METMA (Seryl-tRNA synthetase OS=Methanosarcina mazei GN=serS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 76/239 (31.80%), Postives = 120/239 (50.21%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ + + + VG P  F F  K H+++G++LDI DF+ AA++SG  F   K     LE  LIN+ L    ++G+  +  P ++    +   G  P+  +      +G    L  TAE+PV  + MD  +    LP+   A++ CF             + R HQF+K+E+  F  PE S    E+L    E++   L L ++ V + T DLG  A + +D+E W+P   +Y EIS
Sbjct:  113 PVGKDENDNPVVRVVGEPREFTFTPKPHWEIGESLDILDFERAAKISGQGFAVYKGMGAKLERALINFMLDVHTRQGYLEVFPPVLINEKAMTGTGQLPKFKDDMYGCTDGF--YLAPTAEVPVTNLFMDEYMEN--LPVFLTAYTACFRREAGKHGQDTRGIIRNHQFNKVELVKFVMPETSYEELEKLTLDAEEILKLLKLPYRVVSLCTGDLGFSAAKTYDLEVWVPTQEKYREIS 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ACIAD (Seryl-tRNA synthetase OS=Acinetobacter sp. (strain ADP1) GN=serS PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 73/226 (32.30%), Postives = 115/226 (50.88%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQC-LIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+F +KDH  LG+ +   +F+ A +++GS+F  LK     L+  L  + L +  +K G+T    P +V +  +   G  P+     ++ ++G  +  LI TAE+PV     D I+    LPLKYAA + CF             L R HQF K+EM    +PE+S    EEL    E +  +LGL ++ + +   D+G  + + +D+E W+P    Y EIS
Sbjct:  127 GTPRQFDFEIKDHTDLGEWMGGLEFETATKLTGSRFSVLKGPLARLQRALTQFMLDTHTLKNGYTEAYVPYLVNADSLRGTGQLPK-FEEDLFKLQGEKEYYLIPTAEVPVTNFVRDEIIDAERLPLKYAAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQIVKPEDSMQALEELTGHAEGILQALGLPYRKILLCGGDMGFGSTKTYDLEVWVPSQNTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_XANC5 (Seryl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=serS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 74/241 (30.71%), Postives = 119/241 (49.38%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTV-GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQ-CLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G ++   + ++  G P  F+F VKDH +LG      D + AA++SG++F  L+     L   L  + L   V + G+     P +V +  +   G  P+  +    +  G  +  LI T+E+P+  I  D I+    LPL+  A S CF             + R HQF K+E+   C PE+SD+ H+ + R  E +   LGL ++ V + T D+G  A + +D+E W+P    Y EIS
Sbjct:  113 PLGKDESENVEQSRWGTPRQFDFAVKDHVELGAPHGWLDGETAAKLSGARFTVLRGPVARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFEDDLFQTEVGESRRYLIPTSEVPLTNIVRDEIIDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELVTACAPEDSDAEHQRMTRCAEVVLEQLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQNTYREIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHIE6 (Seryl-tRNA synthetase OS=Rhizobium etli (strain CIAT 652) GN=serS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 72/240 (30.00%), Postives = 125/240 (52.08%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E  +++ +TVG    +N   K+HF++G+AL   DF+ AA++SGS+F  L      LE  L  + +     + G+T +++P +VR+  +   G  P+       + +  D+ LI TAE+ +  +  + IL +  LPL++ A +  F             + R HQF K E+      + + + HE +    E++   LGLHF+T+ + T D+G  + + +D+E W+PG   + EIS
Sbjct:  114 PVGKDEHDNVVTRTVGEKPRWNHTPKEHFEIGEALGYMDFERAAKLSGSRFTVLTGPLARLERALGQFMIDLHTREHGYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTD--DRYLIPTAEVTLTNLVREEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDADSAIAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PHEZH (Seryl-tRNA synthetase OS=Phenylobacterium zucineum (strain HLK1) GN=serS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 73/225 (32.44%), Postives = 116/225 (51.56%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P     P KDH  LG+A+ + DF+AAA +SG++F  LK +   LE  L  + L  +  + G+T +  P +V  +        P+ A     + +G  + LI TAE+P+  + M  I++E  LPL+Y A + CF             + R HQF+K+E+     PE+S   HE ++   E +   L L F+T+ +   D+G  A + +D+E W+P   +Y EIS
Sbjct:  129 GEPRAIAAP-KDHATLGEAMGLMDFEAAARMSGARFVVLKGQLARLERALGQFMLDLQTQEHGYTEVNPPLLVNDAAAYGTDKLPKFAEDLFQTTDG--RWLIPTAEVPLTSLVMGQIVAEEELPLRYTALTPCFRSEAGASGRDTRGMIRQHQFNKVELVSITTPEQSADEHERMVGCAEAVLKRLELPFRTMLLCRGDMGFGARKTYDLEVWLPSQEKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_OCEIH (Seryl-tRNA synthetase OS=Oceanobacillus iheyensis GN=serS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 80/240 (33.33%), Postives = 116/240 (48.33%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ +I  +  G    F F    H+ +   LDI DF+ A +V+GS+F + K     LE  L N+ +     + G+  +  P IV  S +   G  P+      + +E  D  ++ TAE+PV   H + IL    LP KY AFS  F             L R HQF+K+E+  F +PE+S    E L    E +   L L ++ + M T DLG  A +K+D+E W+P    Y EIS
Sbjct:  113 PVGEDEEDNIEARKWGEAPNFAFEALPHWDVATNLDIIDFERAGKVTGSRFVFYKGLGARLERALWNFMMDLHADEHGYQEMLPPYIVNRSSMTGTGQLPK-FEEDAFKLEEWDYFMVPTAEVPVTNYHREEILGIDDLPKKYVAFSASFRSEAGSAGRDTRGLIRQHQFNKVELVNFVKPEDSYDVLERLTGEAEKVLQLLKLPYRVMSMCTGDLGFTAAKKYDIEVWIPSQETYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NOVAD (Seryl-tRNA synthetase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=serS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 74/225 (32.89%), Postives = 114/225 (50.67%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F F  K+H  LG AL + DF+  A +SG++F +LK +   L   L  + L  +  + G+     P +V+   V   G  P+ A     + +G  + LI TAE+ +       IL E+ LPL+  A + CF               R HQF K+E+    +PE+S+S HE + +  E +  +LGL ++ V + T D+G  A + +D+E W+PG G Y EIS
Sbjct:  129 GTPRDFAFAPKEHADLGPALGL-DFETGALISGARFTFLKGQMARLHRALAQFMLDRQTGENGYMECIPPLLVKDEAVFGTGQLPKFAEDLFRTTDG--RWLIPTAEVSLTNAVQGQILGEAQLPLRMTALTPCFRSEAGAAGRDTRGFIRQHQFEKVELVSITRPEDSESEHERMTQCAEGILQALGLPYRKVLLCTGDMGFTARKTYDLEVWLPGQGAYREIS 350          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_RHIL36.329e-2830.83Seryl-tRNA synthetase OS=Rhizobium leguminosarum b... [more]
SYS_PSEPF6.329e-2832.10Seryl-tRNA synthetase OS=Pseudomonas fluorescens (... [more]
SYS_PROVI6.329e-2832.37Seryl-tRNA synthetase OS=Prosthecochloris vibriofo... [more]
SYS_METMA6.329e-2831.80Seryl-tRNA synthetase OS=Methanosarcina mazei GN=s... [more]
SYS_ACIAD6.329e-2832.30Seryl-tRNA synthetase OS=Acinetobacter sp. (strain... [more]
SYS_XANC58.266e-2830.71Seryl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYS_RHIE68.266e-2830.00Seryl-tRNA synthetase OS=Rhizobium etli (strain CI... [more]
SYS_PHEZH8.266e-2832.44Seryl-tRNA synthetase OS=Phenylobacterium zucineum... [more]
SYS_OCEIH8.266e-2833.33Seryl-tRNA synthetase OS=Oceanobacillus iheyensis ... [more]
SYS_NOVAD8.266e-2832.89Seryl-tRNA synthetase OS=Novosphingobium aromatici... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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