FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METSB (Seryl-tRNA synthetase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=serS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 73/246 (29.67%), Postives = 120/246 (48.78%), Query Frame = 1
Query:   37 TVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIG-------------------TAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            T G    F+F   +H++LG+ L + DF+ AA++SG++F   K     LE  L  + L     + G+T +  P +VR   +      P+  N Q ++  GA   LI                    TAE+P+  +  +SIL E  LPL++ A + CF             + R HQF+K+E+     PE++ + HE ++   E++   L L ++ V + T D+G  + + +D+E W+PG  RY EIS
Sbjct:  127 TFGEKPRFSFDPAEHYELGETLGLMDFETAAKLSGARFVVNKGPLARLERALGAFMLDLHTGEHGYTEVNPPILVRDDAMFGTAQLPKFENDQFWARPGAHPLLIDMFGREEAEEMKKNRLWLIPTAEVPLTNLVRESILDEKQLPLRFTASTPCFRAEAGSAGRDTRGMIRQHQFTKVELVSITTPEQALAEHERMLSCAEEVLKRLKLPYRVVTLCTGDMGFASQKTYDIEVWLPGQDRYREIS 372          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MARMM (Seryl-tRNA synthetase OS=Maricaulis maris (strain MCS10) GN=serS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28
Identity = 75/240 (31.25%), Postives = 120/240 (50.00%), Query Frame = 1
Query:    1 PVGGEDC-SIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ++  ++  +  G P    F  +DH  LG++L   DF  AAE+SGS+F  L+     LE  L  + L     + G+  ++ P +VR   V   G  P+ A     + +  D  LI TAE+P+  +  ++I +E+ LP++  A++ CF             + R+HQF K+EM     P+ESD+  E +    E +   L L ++ + + T D+G  A R +D+E WMP    Y EIS
Sbjct:  114 PQGADEADNVEERRWGEPRTMAFTPRDHVDLGESLGQMDFKKAAEISGSRFVALRGGLARLERALAQFMLDLHTTEHGYEEVSPPYMVRDEAVFGTGQLPKFAEDLFRTTD--DHWLIPTAEVPLTNLARETIHAEADLPMRMTAYTPCFRSEAGSAGRDTRGMIRLHQFQKVEMVSIVTPDESDAELERMTGCAEKVLQLLELPYRVMKLCTGDMGFAARRTYDLEVWMPSQDCYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SILPO (Seryl-tRNA synthetase OS=Silicibacter pomeroyi GN=serS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 71/225 (31.56%), Postives = 112/225 (49.78%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P   +F  K+HF L    D  DF+ AA++SG++F  L      +   L  + L +   + G T +  P +V S ++   G  P+       + EG    LI T+E+ +  I   S ++E  LP +Y A S CF             + R HQF K+EM     P+ SD+  + ++R  E +  +LG+ ++T+ + T D+G  A R +D+EAW+PG   Y EIS
Sbjct:  129 GTPREMDFAPKEHFDLASVQDGMDFETAAKLSGARFVLLSGAVARIHRALAQFMLDTHSEQNGLTEVNGPVLVLSEMMYGTGQLPKFGEDSYQTREG--WWLIPTSEVSLTNIVNGSTIAEDYLPRRYTAHSLCFRSEAGSAGKDTRGMLRQHQFEKVEMVSVTHPDHSDAEQKRMLRCAEGILEALGIPYRTIVLCTGDMGFGARRTYDIEAWLPGQNTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SHEFN (Seryl-tRNA synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=serS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 75/244 (30.74%), Postives = 120/244 (49.18%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG ++   +  +  G P VF+F VKDH  LG+AL+  DF  A ++SGS+F  ++ +   L   L  + L     + G+T    P +V    +   G  P+      +T+  + EG    LI TAE+P+     D I+ E+ LP+K  A + CF             + R+HQF K+E+     P+ S    E++    E +   L L ++T+ + T D+G  + + FD+E W+P    Y EIS
Sbjct:  112 PVGADENDNVEVRRWGTPKVFDFEVKDHIDLGEALEGLDFKNAVKISGSRFIIMRGQIARLNRALGQFMLDLHTTEHGYTETYVPLLVNEESLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNYVRDMIVDETELPMKMTALTPCFRSEAGSYGRDTRGVIRLHQFDKVELVQIAHPDHSMQALEDITSHAEKVLQLLNLPYRTMVLCTGDMGFGSSKTFDIEVWLPAQNTYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHOPS (Seryl-tRNA synthetase OS=Rhodopseudomonas palustris (strain BisB5) GN=serS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 75/242 (30.99%), Postives = 120/242 (49.59%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ----VYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGR---YGEIS 714
            E  ++ R   G    + F  K H  LG+AL + DF+AAA++SG++F  LKN    LE  +  + L     + G+T +  P +V+   +      P+  + Q         G    LI TAE+ +  +  +SIL E  LP++  A + CF             + R HQF+K+E+     PE+S   HE ++   E++   LGLH++ + + T D+G  + + +D+E WMPG G    Y EIS
Sbjct:  119 EHGNVERHHFGAKRSYTFTPKAHDDLGEALGMMDFEAAAKLSGARFVVLKNGLARLERAIGQFFLDVHTGEHGYTEVNPPLLVKDDAMFGTAQLPKFRDDQFAAGAIGSGGEGYWLIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSITTPEKSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIEVWMPGQGEGGAYREIS 360          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PROMA (Seryl-tRNA synthetase OS=Prochlorococcus marinus GN=serS PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 64/214 (29.91%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   73 KDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K+H+++ + L + D + +  ++ S+F  L N    LE  LIN+ L     +G++ +  P +V ++ +E  G  P+ A  + +     D  L  TAE+P+  +H + ++    LP+KY A+S CF             L R+HQF+K+E++ F +P++S   H+ +    E +   L L ++ V++ + DLG  A   +D+E W+PG   Y EIS
Sbjct:  141 KEHWEIAEELGLLDTEKSVRIAKSRFVTLFNHGARLERSLINFMLDIHTSKGYSEVLPPVLVNTASLEGSGQLPKFAE-ESFKCSEDDLWLTPTAEVPLTSLHRNEVIPFEKLPIKYVAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFVEPKKSKEAHQIITADAEAILQKLELPYRVVELCSGDLGFSASCTYDLEVWLPGANSYREIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SHEHH (Seryl-tRNA synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=serS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27
Identity = 73/244 (29.92%), Postives = 120/244 (49.18%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G ++   +  +  G P  ++F VKDH +LG+ +   DF  A +++GS+F  +K +   +   L  + L     + G+T    P +V    +   G  P+      +T+  + EG    LI TAE+P+  +  D+I+ E  LP+K  A + CF             L R HQF K+E+    +PE S    EEL    E +   LGL ++TV + T D+G  + + +D+E W+P    + EIS
Sbjct:  112 PIGADESENVEVRRWGTPKEYDFEVKDHVELGENIGGLDFKNAVKITGSRFIVMKGQIARMHRALAQFMLDLHTTEHGYTEAYVPLLVNEDSLMGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDTIVDEEELPIKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQLVKPENSMQALEELTAHAETVLQKLGLPYRTVVLCTGDMGFGSSKTYDIEVWLPAQNTFREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PSYWF (Seryl-tRNA synthetase OS=Psychrobacter sp. (strain PRwf-1) GN=serS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27
Identity = 82/240 (34.17%), Postives = 116/240 (48.33%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN-----TQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED   +RK  G P  F+F V++H  LG+ L   DF AAA+++GS+F  LK +   L   LI + L+   +K G+T    P IV S  +E  G  P+        T   + E     LI TAE+P+  +     L  S LPLK+ A + CF             L R HQF K+EM       +SD   E++    E +   L L ++ V + T D+G  A R +D+E W+P    Y EIS
Sbjct:  118 EDNVEVRKW-GTPRQFDFKVQEHSDLGEVLGQLDFAAAAKLTGSRFSVLKGQLAQLHRALIQFMLNTHTVKYGYTECYVPYIVNSDSLEGTGQLPKFEEDLFKLTNHTNNEAMGFYLIPTAEVPMTNLVRGERLDASELPLKFTAHTPCFRSEAGSHGRDTRGLIRQHQFEKVEMVNIATAAQSDELLEQMTGQAEYILQQLQLPYRVVKLCTGDMGFSALRTYDIEVWVPSQDTYREIS 356          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METPB (Seryl-tRNA synthetase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=serS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.410e-27
Identity = 69/215 (32.09%), Postives = 114/215 (53.02%), Query Frame = 1
Query:   73 KDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            + HF+LG+A  + DF+AAA++SGS+F  LK     LE  L  + L     + G+T +  P +VR   +      P+  + Q  + +G    LI TAE+P+  +  ++IL+E  LPL++ A + CF             + R HQF+K+E+     PE+S   HE ++   E +   L L ++ + + T D+G  + + +D+E W+PG   Y EIS
Sbjct:  139 RQHFELGEATGLMDFEAAAKLSGSRFVVLKGPLARLERALGQFMLDLHTGEHGYTEVVPPVLVRDEAMFGTAQLPKFRDDQFAAGDGF--WLIPTAEVPLTNLVRENILAEDELPLRFTALTPCFRAEAGAAGRDTRGMLRQHQFNKVELVSITAPEKSAEEHERMLACAEAVLQKLDLTYRVMTLCTGDMGFASQKTYDIEVWVPGQQTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHOPT (Seryl-tRNA synthetase OS=Rhodopseudomonas palustris (strain TIE-1) GN=serS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.842e-27
Identity = 72/232 (31.03%), Postives = 115/232 (49.57%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ----VYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGR---YGEIS 714
            G    ++F  K H+ LG+AL + DF+AAA++SG++F  LK     LE  +  + L       G+T +  P +V+   +      P+    Q         G    LI TAE+ +  +  +SIL E  LP++  A + CF             + R HQF+K+E+     PE+S   HE ++   E++   LGLH++ + + T D+G  + + +D+E WMPG G    Y EIS
Sbjct:  129 GEKPSYSFTPKPHYDLGEALGMMDFEAAAKLSGARFTVLKKGLARLERAIGQFFLDVHTGDHGYTEVNPPLLVKDDAMFGTAQLPKFREDQFAAGAIGSGGEGYWLIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSITTPEQSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIEVWMPGQGEGGAYREIS 360          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_METSB8.266e-2829.67Seryl-tRNA synthetase OS=Methylocella silvestris (... [more]
SYS_MARMM8.266e-2831.25Seryl-tRNA synthetase OS=Maricaulis maris (strain ... [more]
SYS_SILPO1.080e-2731.56Seryl-tRNA synthetase OS=Silicibacter pomeroyi GN=... [more]
SYS_SHEFN1.080e-2730.74Seryl-tRNA synthetase OS=Shewanella frigidimarina ... [more]
SYS_RHOPS1.080e-2730.99Seryl-tRNA synthetase OS=Rhodopseudomonas palustri... [more]
SYS_PROMA1.080e-2729.91Seryl-tRNA synthetase OS=Prochlorococcus marinus G... [more]
SYS_SHEHH1.410e-2729.92Seryl-tRNA synthetase OS=Shewanella halifaxensis (... [more]
SYS_PSYWF1.410e-2734.17Seryl-tRNA synthetase OS=Psychrobacter sp. (strain... [more]
SYS_METPB1.410e-2732.09Seryl-tRNA synthetase OS=Methylobacterium populi (... [more]
SYS_RHOPT1.842e-2731.03Seryl-tRNA synthetase OS=Rhodopseudomonas palustri... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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