FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEP3 (Seryl-tRNA synthetase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=serS PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.348e-37
Identity = 87/240 (36.25%), Postives = 133/240 (55.42%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G  D   +  +  G P  F+F  K H+++G+ LDI DF+AAA V+GS+F + K     LE  LIN+ L   + K G+T +  P +V    +   G  P+      + + G D  LI TAE+PV  ++ D+I+    LP+ + A+S CF             L R HQF+K+E+  F +P++S    E++ R  E++  +LGL ++ V + T DLG  A +K+D+E WMP  GRY EIS
Sbjct:  112 PIGDSDEDNVEIRRWGEPRKFDFEPKPHWEIGQELDILDFEAAARVTGSRFTFYKGLGARLERALINFMLDLHIEKHGYTEVFPPFMVHRRSMFGTGQLPK-FEEDAFKVYGTDYFLIPTAEVPVTNMYRDTIIDGDKLPIYHCAYSACFRQEAGSAGRDTRGLIRQHQFNKVELVKFTEPDKSYEELEKMTRDAEEVLQALGLPYRVVVICTGDLGFTASKKYDIEVWMPSYGRYVEIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BDEBA (Seryl-tRNA synthetase OS=Bdellovibrio bacteriovorus GN=serS PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.459e-37
Identity = 83/228 (36.40%), Postives = 128/228 (56.14%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K VG P+ F+F  K+H++LG+AL+I DF+ A + +G++F +LK  A  +E  LI + + +  +K G+T +  P +V S+ +   G  P+     V+ +EG+D  LI TAE+PV   + + IL E  LP  + A+S CF             L R HQF K+E+ VF  P++S   HE L    E +   L L F+ V + T D+G  + + +D+E W+PG   Y EIS
Sbjct:  132 KVVGTPTQFSFKAKEHWELGEALNIIDFERAGKTTGTRFAFLKGAAAQMERALIQFMMDKHSMKHGYTEMIPPFMVNSNSLLGTGNFPK-FKEDVFHLEGSDLYLIPTAEVPVTNYYNNEILDEKDLPQSFCAYSPCFRSEAGSAGRDTKGLIRQHQFDKVELMVFAHPDKSHEVHEALTSHAEQILMDLELPFRRVLLCTGDMGFGSAKTYDLEVWLPGQNAYREIS 358          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ROSCS (Seryl-tRNA synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=serS PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.742e-37
Identity = 84/234 (35.90%), Postives = 125/234 (53.42%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E  +++    G P  F+F  K H++LG+ALDI DF+   ++SGS+FY LK     L+  LI W L   I++G+  + TP +V+   +      P+  +     +E  D  L+ TAE+PV  +H D IL    LPL+Y A++ CF             + R HQF K+EM++F  P+ S    E+L    E     LGL F+T ++ T DLG  A R +D+E W PG G + E+S
Sbjct:  117 ETYNVVIAQEGEPRAFDFAPKPHWELGEALDIIDFERGVKLSGSRFYVLKGLGARLQRALIQWMLDLHIQQGYHEVYTPFVVKEQCMWGARQLPKFRDNLYRDVED-DLWLVPTAEVPVTNLHRDEILEADQLPLRYCAYTPCFRREKMSAGRDVRGIKRGHQFDKVEMYMFVHPDTSYDELEKLRADAEATCRLLGLTFRTKELCTGDLGFAATRTYDIEVWAPGQGEWLEVS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_DESPS (Seryl-tRNA synthetase OS=Desulfotalea psychrophila GN=serS PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.742e-37
Identity = 89/240 (37.08%), Postives = 129/240 (53.75%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTV-GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  D   I   V G    F F  K H++LG+  D  DF+ AA++SG++F  LK  A  L+  L N+ L     K G+T +  P +V S+ +   G  P+     +++I+  D  LI TAE+PV  IH D  ++E  LP+KY AF+ CF             L R HQF+K+E+  F  PE S    E L+   E++   LGLH++ V + T DLG  + + +D+E W+PG  +Y EIS
Sbjct:  117 PVGNSDEENIELRVWGKKPEFTFTPKAHYELGEEADTIDFERAAKISGARFAILKGFASRLDRALTNFMLDLHTQKHGYTEVLPPFLVNSASLTATGQLPK-FKEDLFAIKDWDLYLIPTAEVPVTNIHRDETIAEQDLPIKYTAFTPCFRSEAGSHGRDTRGLVRQHQFNKVELVKFTTPERSTDELESLLGDAEEVLQLLGLHYRVVKLCTGDLGFSSSKTYDIEVWLPGQQKYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEVO (Seryl-tRNA synthetase OS=Thermoplasma volcanium GN=serS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 78/223 (34.98%), Postives = 129/223 (57.85%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            G+  V +   K H  LG+ L I D ++AA++SG++FY++KN  + LEM L N+ +  + +RGFT +  P ++    +          +T +Y IE  D  LI T+E  +  +  +  L E  LP++ A  S CF             ++RVHQF+K+E F+FC+PE+S  Y EE++   E++Y SLG+ ++ V++ + +LG  A +K+D+EAW P  G++ EI
Sbjct:  148 GDYEVIDERPKSHVDLGQELGIIDLESAAKISGARFYFIKNRLLKLEMALENYAVDFLSQRGFTVVEPPYMLNLESMRGATDLETFKDT-LYKIEDEDLYLIATSEHSIASMLSNEFLEEKELPIRVAGVSACFRREAGAHGKDTKGIFRVHQFNKIEQFIFCKPEDSWDYLEEILSNAEEIYRSLGIPYRVVNVCSGELGRLAAKKYDIEAWFPAQGKFREI 369          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THETN (Seryl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=serS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 85/240 (35.42%), Postives = 132/240 (55.00%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G  D   +  +  G P  F+F  K H+++G+AL I DF+AA+ V+GS+F + K     LE  LIN+ L   + K G+  +  P +V    +   G  P+      + +EG D  LI TAE+PV  ++ ++I+    LP+ + A+S CF             L R HQF K+E+  F +P++S    E++ R  E++  +LGL ++ V + T DLG  A +K+D+E WMP  GRY EIS
Sbjct:  112 PIGESDEDNVEVRRWGEPRKFDFEPKPHWEIGEALGILDFEAASRVTGSRFVFYKGLGARLERALINFMLDLHIEKHGYKEVFPPFLVHRRSMFGTGQLPK-FEEDAFKVEGTDYFLIPTAEVPVTNLYRETIIDGEQLPIYHCAYSACFRQEAGAAGRDTRGLIRQHQFDKVELVKFTEPDKSYEELEKMTRDAEEVLQALGLPYRVVAICTGDLGFTASKKYDIEVWMPSYGRYVEIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_STAMF (Seryl-tRNA synthetase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=serS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 84/215 (39.07%), Postives = 121/215 (56.28%), Query Frame = 1
Query:   67 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            PV     L K L + D   A +V+GS+FYYL N+ V L+M L+ + +  +  +G+T +  P ++R  V+             +Y IEG D  LI TAE P+  +H    + E  LPLKY   S CF             ++RVHQF K+E FV+ +PE+S    EELI   E L+  LG+ ++ V++A+ DLGAPA +K+D+EAWMP  GRY E+
Sbjct:  160 PVGHADMLEKVLRLGDTFKAGQVAGSRFYYLFNDIVFLDMALLAYAIDYLTSKGYTLVLPPYMLRHKVMMGV-IDMDTFKDAIYKIEGEDLYLIATAEHPLAALHAWEDIPEEELPLKYVGISPCFRKEAGAGNRDLKGIFRVHQFHKVEQFVYAKPEDSWDIMEELISNAEHLFRGLGIPYRIVNIASGDLGAPAAKKYDLEAWMPAQGRYREM 373          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BREBN (Seryl-tRNA synthetase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=serS PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 88/240 (36.67%), Postives = 129/240 (53.75%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G  ED ++I  T G P  F+F +K H++L     I DF+ AA+V+GS+F + K     LE  L+N+ +     + G+  +  P IV  + +   G  P+      + IEG D  LI TAE+PV  +H D I+  + LP  Y AFS CF             L R HQF+K+E+  F +PEES    ++L++  E +   LGL ++ + M T DLG  A +KFD+E W+P    Y EIS
Sbjct:  113 PIGTTEDDNVIAWTWGEPRAFDFEIKPHWELASQAGILDFETAAKVTGSRFVFYKGLGARLERALMNFMMDLHSNEHGYEEVIPPFIVNRTSMTGTGQLPK-FEEDAFKIEGPDYFLIPTAEVPVTNMHRDEIMDGADLPRYYTAFSACFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEESYDELDKLVKNAEKVLQLLGLPYRVLSMCTGDLGFTAAKKFDIEVWIPSGDTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEAC (Seryl-tRNA synthetase OS=Thermoplasma acidophilum GN=serS PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 82/236 (34.75%), Postives = 132/236 (55.93%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPS---VFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            +D    +K  GN     V +   K H  LG  L++ D ++AA +SGS+FY++KN  + LEM L N+ +  + +RGF+ +  P ++    +          +T +Y IEG D  LI T+E  +  +  +  L E  LPL+ A  S CF             ++RVHQF+K+E FVFC+PE+S  + EE++   E +Y SLG+ ++ V++ + +LG  A +K+D+EAW P  G++ EI
Sbjct:  135 DDIEEFKKNSGNSQDYEVLDERPKSHVDLGLDLNVIDLESAARISGSRFYFIKNRLLKLEMALENYAVDFLSQRGFSIVEPPYMLNLESMRGATDLETFKDT-LYKIEGEDLYLIATSEHSIAAMLSNQFLEEKDLPLRVAGISACFRREAGAHGKDTKGIFRVHQFNKIEQFVFCKPEDSWDFLEEILGNAEAIYRSLGIPYRVVNVCSGELGRLAAKKYDIEAWFPAQGKFREI 369          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMJE (Seryl-tRNA synthetase OS=Campylobacter jejuni GN=serS PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 85/239 (35.56%), Postives = 129/239 (53.97%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ ++  K V NP  F+F  K+HF+LG++L+  DF    ++S S+F  LKNE  +L   L+N+ +     RGF  +  P +V  + +   G  P+     +Y ++  D  LI T+EIPV  ++   IL+   LP+K   +S CF             + R HQF K+E+    +PE+SDS   E++    DL SSLGL  + + + T DLG  A +  D+E W+PG  +Y EIS
Sbjct:  109 PVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFCVLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPK-FKEDMYKVDDEDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNKYREIS 346          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_THEP33.348e-3736.25Seryl-tRNA synthetase OS=Thermoanaerobacter pseude... [more]
SYS_BDEBA7.459e-3736.40Seryl-tRNA synthetase OS=Bdellovibrio bacteriovoru... [more]
SYS_ROSCS9.742e-3735.90Seryl-tRNA synthetase OS=Roseiflexus castenholzii ... [more]
SYS_DESPS9.742e-3737.08Seryl-tRNA synthetase OS=Desulfotalea psychrophila... [more]
SYS_THEVO1.662e-3634.98Seryl-tRNA synthetase OS=Thermoplasma volcanium GN... [more]
SYS_THETN1.662e-3635.42Seryl-tRNA synthetase OS=Thermoanaerobacter tengco... [more]
SYS_STAMF1.662e-3639.07Seryl-tRNA synthetase OS=Staphylothermus marinus (... [more]
SYS_BREBN2.835e-3636.67Seryl-tRNA synthetase OS=Brevibacillus brevis (str... [more]
SYS_THEAC3.702e-3634.75Seryl-tRNA synthetase OS=Thermoplasma acidophilum ... [more]
SYS_CAMJE3.702e-3635.56Seryl-tRNA synthetase OS=Campylobacter jejuni GN=s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
back to top