FC920635

Overview
NameFC920635
Unique NameFC920635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15458 contig Ccv1_Contig15458:683..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 71/195 (36.41%), Postives = 96/195 (49.23%), Query Frame = 1
Query:    1 EQLQGHESGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGQGW---IHCWYCNFDKWAKV-MGSQRWRFSSSSFNGWRCSSYDYRP*SEH*TREH*G*SAALSLICQAMSLELMGSWQFLVPLETESLISHLRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVD 573
            +++  +E GLFAI+DGHL   +P YL  HLF NILKE  FW +P+++I KAY  TD  IL  + DLG+G    +     N  K     +G  R     +     +  S D+ P  E    E+ G               + G          +SL  HL S+P +   I+    + L+LA DGLWKVMSNQEAVD
Sbjct:   64 KEVDDNELGLFAIFDGHLSHEIPDYLCSHLFENILKEPNFWQEPEKAIKKAYYITDTTILDKADDLGKGGSTAVTAILINCQKLVVANVGDSRAVICQNGVA--KPLSVDHEPNMEKDEIENRG---GFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPYVTVEIIDDDAEFLILASDGLWKVMSNQEAVD 253          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.201e-21
Identity = 73/195 (37.44%), Postives = 103/195 (52.82%), Query Frame = 1
Query:   13 GHESGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRSISKAYEKTD-QAILSHSSDL---GQGWIHCWYCNFDK-WAKVMGSQRWRFSSSSFNGWRCSSYDYRP*SEH*TREH*G*SAALSLICQAMSLELMGSWQFLVPLETESLISHLRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVDIAR 582
            G+E GLFAI+DGH G+ V AYLQ+HLFSNILK+ EF VDP+R+I+KAYE TD + +  + +DL   G   +     N    W   +G  R   SS          +D    +E    E  G               + G          ++L ++L S+P+I++  +    D L+LA DG+ KVMSNQEAVD+A+
Sbjct:   59 GNELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFLVDPRRAIAKAYENTDQKILADNRTDLESGGSTAVTAILINGKALWIANVGDSRAIVSSRGKAKQMSVDHDPDDDTERSMIESKG---GFVTNRPGDVPRVNGLLAVSRVFGDKNLKAYLNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAVDVAK 250          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C63_ORYSJ (Putative protein phosphatase 2C 63 OS=Oryza sativa subsp. japonica GN=LOC_Os07g33230 PE=5 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.846e-14
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 2
Query:  206 GGSTAGTAILINGQRLWAANVGDSRAVL--STAGVAVHMTTDHDPNTERGSIE 358
            GGSTA TAILING+ L  ANVGDSRAV     AG A  ++ DH+P  ER +IE
Sbjct:   62 GGSTAVTAILINGETLAVANVGDSRAVAFDVRAGRAQQLSVDHEPLRERDAIE 114          

HSP 2 Score: 42.3578 bits (98), Expect = 4.846e-14
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 3
Query:  369 GFVSYMPGDVPRVNGQLAVSRAFGDRE 449
            GFV+ + GDVPRV+ QLA SRAFGDR+
Sbjct:  118 GFVTEIHGDVPRVDAQLATSRAFGDRQ 144          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C74_ORYSJ (Probable protein phosphatase 2C 74 OS=Oryza sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.595e-13
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 2
Query:  203 RGGSTAGTAILINGQRLWAANVGDSRAVLSTAGVAVHMTTDHDP--NTERGSIE 358
            RGG+ A TA++I+G  L+ AN+GD RAV+S  G A  +T+DH P  + ER  IE
Sbjct:  232 RGGACAATALVIDGD-LYVANLGDCRAVISRHGAAAALTSDHTPARDDERSRIE 284          

HSP 2 Score: 41.5874 bits (96), Expect = 1.595e-13
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 1
Query:  469 SDPDIQNTILYGR-CDILVLARDGLWKVMSNQEAVD 573
            ++P++  T L G  C+ LV+A DGLW  +SNQEAVD
Sbjct:  321 AEPEVSRTPLAGAGCEFLVIASDGLWNKVSNQEAVD 356          

HSP 3 Score: 24.6386 bits (52), Expect = 1.595e-13
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  369 GFVSYMPGDVPRVNGQLAVSRAFGD 443
            G+VS     V RV   LAV+R+FGD
Sbjct:  288 GYVSCGSNGVWRVQDCLAVTRSFGD 312          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 40.4318 bits (93), Expect = 2.401e-13
Identity = 18/84 (21.43%), Postives = 39/84 (46.43%), Query Frame = 1
Query:   22 SGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSD---------------LGQGWIHCWYC 228
            +  F +YDGH G  V  Y   HL + +L++E+F  +   ++ +++ + D+ + + ++                 G+ W+ C  C
Sbjct:   55 TSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSSNLANALRQSFFRMDEMLRNQAASKELTEYGSGNEYWRTAGRSWLRCAPC 138          

HSP 2 Score: 35.4242 bits (80), Expect = 2.401e-13
Identity = 17/43 (39.53%), Postives = 25/43 (58.14%), Query Frame = 2
Query:  209 GSTAGTAILINGQRLWAANVGDSRAVLSTAGVAVHMTTDHDPN 337
            G TA   +LI   ++   N GD+R V+S  G A+ ++ DH PN
Sbjct:  151 GCTA-CVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPN 192          

HSP 3 Score: 33.8834 bits (76), Expect = 2.401e-13
Identity = 16/40 (40.00%), Postives = 23/40 (57.50%), Query Frame = 1
Query:  463 LRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVDIAR 582
            L   P+I+   L    + LV+A DG+W V++NQ  VD  R
Sbjct:  244 LTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVR 283          

HSP 4 Score: 24.6386 bits (52), Expect = 2.401e-13
Identity = 14/25 (56.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  369 GFVSYMPGDVPRVNGQLAVSRAFGD 443
            G VS+  G   RVN  +AVSRA GD
Sbjct:  205 GSVSFSRGS-HRVNNGIAVSRAIGD 228          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 41.9726 bits (97), Expect = 1.611e-12
Identity = 20/58 (34.48%), Postives = 34/58 (58.62%), Query Frame = 1
Query:  409 MGSWQFLVPLETESLISHLRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVDIAR 582
            +G W   +P   +  IS L ++P+ + T+L    + L++  DG+W VM++Q AV I R
Sbjct:  256 LGDWDMKMP---DGSISPLIAEPEFRQTMLTEDDEFLIMGCDGIWDVMTSQHAVSIVR 310          

HSP 2 Score: 41.2022 bits (95), Expect = 1.611e-12
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 2
Query:  209 GSTAGTAILINGQRLWAANVGDSRAVLSTAGVAVHMTTDHDPN 337
            G+TA TA L+ G++L  AN GD RAVL   GVA+ M+ DH  N
Sbjct:  185 GTTALTA-LVFGRQLLVANAGDCRAVLCRRGVAMEMSRDHRAN 226          

HSP 3 Score: 29.261 bits (64), Expect = 1.611e-12
Identity = 13/40 (32.50%), Postives = 21/40 (52.50%), Query Frame = 1
Query:   22 SGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRS 141
            S  + ++DGH G    AY++ H    + ++ EF   PQ S
Sbjct:  113 SAFYGVFDGHGGLDAAAYMKRHAMRFLFEDSEF---PQAS 149          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 56/203 (27.59%), Postives = 93/203 (45.81%), Query Frame = 1
Query:    7 LQGHESGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL----SHSSDLGQGWIHCWYCNFDKWAKVMGSQRWRFSSSSFNGWRCS-------SYDYRP*SEH*TREH*G*SAALSLICQAMSLELMGSWQFLVPLETESLISHLRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVDIAR 582
            + G   GLF ++DGH G     Y+++HLFSN++K  +F  D + +I++ Y  TD   L    SH+ D G         +    A ++G +    +        C        S D++P     + E      A   +  A +  + G          + L  ++ +DP+I+  I+    + L+LA DGLW V+SN+EAVD+ R
Sbjct:  106 VDGETIGLFGVFDGHGGARAAEYVKQHLFSNLIKHPKFISDIKSAIAETYNHTDSEFLKAESSHTRDAG---------STASTAILVGDRLLVANVGDSRAVVCRGGDAIAVSRDHKPDQ---SDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVR 296          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C77_ORYSJ (Probable protein phosphatase 2C 77 OS=Oryza sativa subsp. japonica GN=Os12g0198200 PE=2 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 7.471e-12
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 2
Query:  203 RGGSTAGTAILINGQRLWAANVGDSRAVL-STAGVAVHMTTDHDPNTE 343
            RGG+ A TA++ +G+ L+ +NVGD RAVL S  GVA  +T+DH P  E
Sbjct:  247 RGGACAATALVKDGE-LYVSNVGDCRAVLGSRGGVATALTSDHTPGRE 293          

HSP 2 Score: 36.5798 bits (83), Expect = 7.471e-12
Identity = 17/24 (70.83%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  502 GRCDILVLARDGLWKVMSNQEAVD 573
            G C  LVLA DGLW  +SNQEAVD
Sbjct:  350 GDCRFLVLASDGLWCKVSNQEAVD 373          

HSP 3 Score: 27.7202 bits (60), Expect = 7.471e-12
Identity = 15/25 (60.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  369 GFVSYMPGDVPRVNGQLAVSRAFGD 443
            G+VS     V RV   LAVSRAFGD
Sbjct:  304 GYVSCGGSGVWRVQDSLAVSRAFGD 328          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 56/197 (28.43%), Postives = 89/197 (45.18%), Query Frame = 1
Query:    4 QLQGHESGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSS----DLGQGWIHCWYCNFDKWAKVMGSQRWRFSSSSFNGWRCSSYDYRP*SEH*TREH*G*SAALSLICQAMSLELMGSWQFLVPLETESLISHLRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVDIAR 582
            ++ G    LF ++DGH G     YL+E+LF N+LK  EF  D + +IS+ Y+KTD   L   S    D G             +   +G  R   S +        S D++P   + + E      A  ++  A +  + G            L   + ++P+IQ  ++    + LVLA DGLW V+ N+EAV +A+
Sbjct:  134 EIDGQAVSLFGVFDGHGGPRAAEYLKENLFENLLKHPEFLTDTKLAISETYQKTDTDFLESESNAFRDDGSTASTAVLVGGHLYVANVGDSRAVVSKA--GKAMALSEDHKP---NRSDERKRIENAGGVVIWAGTWRVGGVLAMSRAFGNRLLKPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAK 325          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 53/197 (26.90%), Postives = 88/197 (44.67%), Query Frame = 1
Query:    4 QLQGHESGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSS----DLGQGWIHCWYCNFDKWAKVMGSQRWRFSSSSFNGWRCSSYDYRP*SEH*TREH*G*SAALSLICQAMSLELMGSWQFLVPLETESLISHLRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVDIAR 582
            ++   +  LF I+DGH G     YL+EHLF N++K  EF  + + +IS+ Y+KTD   L   S    D G             +   +G  R   S +        S D++P   + + E     +A  ++  A +  + G            L   + +DP+IQ   +    + L+LA DGLW V+ N++AV + +
Sbjct:  252 KIDDKQISLFGIFDGHGGSRAAEYLKEHLFENLMKHPEFMTNTKLAISETYKKTDSEFLDSESHTHRDDGSTASTAVLVGNHLYVANVGDSRAVISKA--GKAIALSEDHKP---NRSDERKRIESAGGVVMWAGTWRVGGVLAMSRAFGNRLLKQFVVADPEIQEQEIDDELEFLILASDGLWDVVPNEDAVSLVK 443          
The following BLAST results are available for this feature:
BLAST of FC920635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
P2C39_ARATH3.681e-2136.41Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C17_ARATH8.201e-2137.44Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C63_ORYSJ4.846e-1460.38Putative protein phosphatase 2C 63 OS=Oryza sativa... [more]
P2C74_ORYSJ1.595e-1350.00Probable protein phosphatase 2C 74 OS=Oryza sativa... [more]
P2C42_ORYSJ2.401e-1321.43Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
P2C47_ORYSJ1.611e-1234.48Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C10_ORYSJ4.080e-1227.59Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C77_ORYSJ7.471e-1252.08Probable protein phosphatase 2C 77 OS=Oryza sativa... [more]
P2C13_ORYSJ9.088e-1228.43Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C52_ORYSJ3.454e-1126.90Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC32011A10EF RVDevelop1 Citrus clementina cDNA clone C32011A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920635 ID=FC920635; Name=FC920635; organism=Citrus clementina; type=EST; length=583bp
GAGCAACTTCAAGGTCATGAATCCGGGTTGTTTGCTATTTATGACGGCCA
TTTGGGAGAAACTGTGCCTGCCTACCTACAAGAGCATTTGTTTTCCAACA
TCCTAAAGGAGGAAGAGTTTTGGGTTGACCCCCAGAGATCTATCTCCAAA
GCTTATGAGAAGACAGACCAAGCAATTCTCTCACACAGCTCTGACTTGGG
CCAGGGGTGGATCCACTGCTGGTACTGCAATTTTGATAAATGGGCAAAGG
TTATGGGCAGCCAACGTTGGAGATTCTCGAGCAGTTCTTTCAACGGCTGG
CGTTGCAGTTCATATGACTACAGACCATGATCCGAACACTGAACGAGGGA
GCATTGAGGATAAAGCGCGGCTTTGTCTCTTATATGCCAGGCGATGTCCC
TCGAGTTAATGGGCAGCTGGCAGTTTCTCGTGCCTTTGGAGACAGAGAGC
CTTATATCACATTTGCGATCAGATCCTGACATACAAAATACTATCTTATA
CGGCCGTTGTGACATCCTAGTCCTTGCAAGAGATGGTCTTTGGAAGGTGA
TGAGCAATCAAGAGGCTGTGGATATTGCAAGAA
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