FC920645

Overview
NameFC920645
Unique NameFC920645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 5.142e-53
Identity = 102/199 (51.26%), Postives = 126/199 (63.32%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   + REIAAF  QT HETTGGW  AP G YAWGYCF+ E   PS YC  +  +PC    +YYGRGPIQ++WNYNY +C                 ATDPV+S ++A+WFWMT Q PKPSCH+VIT  W P
Sbjct:   51 CGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE-QNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTP 243          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.716e-53
Identity = 103/202 (50.99%), Postives = 126/202 (62.38%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+S ++A+WFWMT Q PKPSCH+VI   W P
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNP 255          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.716e-53
Identity = 104/190 (54.74%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  142 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTG  GW  AP G YAWGYC+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +S +SA WFWMT Q PKPSCH VI   W P
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSP 229          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.716e-53
Identity = 104/190 (54.74%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  142 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTG  GW  AP G YAWGYC+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +S +SA WFWMT Q PKPSCH VI   W P
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQC--GRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSP 251          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.771e-53
Identity = 100/198 (50.51%), Postives = 125/198 (63.13%), Query Frame = 1
Query:  112 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G G   G    G G  GG +  ++S+E+FE LL +RND  CPARGFYTYDA + AA AFP F  +G++  R RE+AAF  QT HETTGGW  AP G Y+WGYCF  EI   + YC  +  +PC    KY+GRGPIQL++NYNY                    A+DPV+S ++A+WFWMT Q PKPSCH+VIT +W P
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTP 262          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.496e-52
Identity = 102/200 (51.00%), Postives = 125/200 (62.50%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+S +SAIWFWMT Q PKPSCH+VI   W+P
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQP 255          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.333e-52
Identity = 104/200 (52.00%), Postives = 126/200 (63.00%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD V+S +SAIWFWMT Q PKPSCH+VIT  W+P
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQP 245          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.698e-52
Identity = 97/185 (52.43%), Postives = 120/185 (64.86%), Query Frame = 1
Query:  151 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T R RE+AAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY  C                 AT+ V+S +SAIWFWMTAQ PKPSCH+VIT  W P
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPC--GRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTP 261          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.654e-51
Identity = 102/200 (51.00%), Postives = 125/200 (62.50%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+S +SAIWFWMT Q PKPSCH+VIT  W+P
Sbjct:   53 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQP 249          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.654e-51
Identity = 99/186 (53.23%), Postives = 121/186 (65.05%), Query Frame = 1
Query:  151 GTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD ++S +SAIWFWMT Q PKPSCH+VIT  W+P
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQP 243          
The following BLAST results are available for this feature:
BLAST of FC920645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_PEA5.142e-5351.26Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_SOLTU6.716e-5350.99Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_GOSHI6.716e-5354.74Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI6.716e-5354.74Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI9_ORYSJ8.771e-5350.51Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU1.496e-5251.00Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU3.333e-5252.00Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC9.698e-5252.43Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIC_SOLLC1.654e-5151.00Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_SOLTU1.654e-5153.23Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC32011B10EF RVDevelop1 Citrus clementina cDNA clone C32011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920645 ID=FC920645; Name=FC920645; organism=Citrus clementina; type=EST; length=693bp
AGCAGAGGATAATTTCTTCATAACTGTTGCTTTCAAATGAGGCTTATTGC
GTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAG
CACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCAC
GGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGA
AGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCT
ACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGT
AACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGC
CCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAG
AATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCC
TACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCC
AATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAG
GGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCA
GTACTATCATTNCAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACC
AAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCA
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