FC920645

Overview
NameFC920645
Unique NameFC920645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.093e-46
Identity = 96/201 (47.76%), Postives = 119/201 (59.20%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+     RE+AAF AQT HETTGGW  AP G Y+WGYCF  E +  +P YC     +PC    KYYGRGPIQ+T+NYNY                    A+D  +S ++A WFWMT Q PKPSCH VIT +W P
Sbjct:   57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTP 253          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 90/188 (47.87%), Postives = 111/188 (59.04%), Query Frame = 1
Query:  151 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF AQT HETTGGW  AP G YAWGYCF  E    +   YC  +  +PC    KYYGRGPIQL++N+NY                    A+D  +S  +A WFWMT Q PKPSCH V T +W P
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTP 260          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 87/181 (48.07%), Postives = 108/181 (59.67%), Query Frame = 1
Query:  151 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++S ++AIWFWMTAQ  KPSCH VI  +W P
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTP 186          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.658e-43
Identity = 83/175 (47.43%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  184 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPP-KPSCHEVITDEWKP 693
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT  ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  C                 ATDPVLS ++A+WFWM       PSCHEVIT EW P
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSP 240          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 86/181 (47.51%), Postives = 107/181 (59.12%), Query Frame = 1
Query:  151 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++S ++AIWFWMT Q  KPSCH VI  +W P
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTP 186          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.334e-42
Identity = 81/188 (43.09%), Postives = 112/188 (59.57%), Query Frame = 1
Query:  145 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ  HETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY                     +D  ++ Q+A+WFWMT +  KPSCH+V+  E++P
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRP 226          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 86/181 (47.51%), Postives = 109/181 (60.22%), Query Frame = 1
Query:  151 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A  G +A GYCF+ E                 +YGRGPIQLT   NY                    ATD  +S ++AIWFWMTAQ  KPSCH+VIT +W P
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE----------GNQMGSGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTP 180          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 90/200 (45.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY                    +TD V+S ++AIWFWMTAQ  KPSCH+VI   W P
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTP 195          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 86/181 (47.51%), Postives = 104/181 (57.46%), Query Frame = 1
Query:  151 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   +P G YA GYCF+ E                 YYGRGPIQLT   NY                    ATD  +S ++AIWFWMT Q  KPSCH+VIT  W P
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLRE----------GNQMGNGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTP 187          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.415e-39
Identity = 85/194 (43.81%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  112 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HET G W  A G +Y WGYC +                              NYNY  C                  TDP ++ ++A+WFWMT Q PKPSCH VIT+ W P
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSPKPSCHAVITESWTP 227          
The following BLAST results are available for this feature:
BLAST of FC920645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_ORYSJ2.093e-4647.76Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ6.732e-4547.87Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI9.721e-4448.07Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_POPTR1.658e-4347.43Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SOLLC2.166e-4347.51Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ5.334e-4243.09Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC2.241e-4047.51Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ3.236e-3945.00Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY9.415e-3947.51Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_POPTR9.415e-3943.81Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionC32011B10EF RVDevelop1 Citrus clementina cDNA clone C32011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920645 ID=FC920645; Name=FC920645; organism=Citrus clementina; type=EST; length=693bp
AGCAGAGGATAATTTCTTCATAACTGTTGCTTTCAAATGAGGCTTATTGC
GTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAG
CACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCAC
GGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGA
AGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCT
ACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGT
AACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGC
CCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAG
AATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCC
TACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCC
AATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAG
GGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCA
GTACTATCATTNCAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACC
AAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCA
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