FC920645

Overview
NameFC920645
Unique NameFC920645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.776e-37
Identity = 81/175 (46.29%), Postives = 101/175 (57.71%), Query Frame = 1
Query:  169 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG SG++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +S ++AIWFWMT Q  KPS H+VI   W P
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNQNNYEKA--GNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTP 186          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.166e-37
Identity = 80/175 (45.71%), Postives = 101/175 (57.71%), Query Frame = 1
Query:  169 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +S ++AIWFWMT Q  KPS H+VI   W P
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNRNNYEKA--GTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTP 186          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.460e-36
Identity = 81/203 (39.90%), Postives = 113/203 (55.67%), Query Frame = 1
Query:  100 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQ-PPKPSCHEVITDEWKP 693
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF AQT H T+       GG Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++ ++A+W WMTA+ P +PS H V+T +W P
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTP 267          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.460e-36
Identity = 81/203 (39.90%), Postives = 113/203 (55.67%), Query Frame = 1
Query:  100 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQ-PPKPSCHEVITDEWKP 693
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF AQT H T+       GG Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++ ++A+W WMTA+ P +PS H V+T +W P
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTP 267          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 73/175 (41.71%), Postives = 93/175 (53.14%), Query Frame = 1
Query:  169 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +R RE+AAF AQT HETTGGW  AP G Y  G                       Y+GRGPIQ+++NYNY                     +D  +  ++A+WFWMT Q PKPS H+VIT  W P
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG-------------------STSDYFGRGPIQISYNYNY--GAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSP 146          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 63/182 (34.62%), Postives = 100/182 (54.95%), Query Frame = 1
Query:  142 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEIS-PPSPYC-NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVI 675
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FPAFG  G+   R RE+AAF A     T+G   D     +AWG C I+  +   + +C + ++PC    KY  RGPIQLT N+NY                      DP++S ++A+WFWM+    KPSCH+++
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIV 297          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 68/181 (37.57%), Postives = 93/181 (51.38%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC---NLNYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFW 633
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P+FG +G+     REIAAFFA   HET               +C+I EI  PS  YC   +  +PC  GK YYGRGP+Q++WN+NY                    A  PVL+ Q+A+W+W
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 61/180 (33.89%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  112 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWM 636
            G G   G    G G+ G  +  +++   F  +        C  + FYT  AF+ A  A+P F + G E    REIAAFFA   HET               +C+ISEI+  + YC   N  +PC    KYYGRGP+Q++WNYNY                    A D V++ ++A+WFWM
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 60/188 (31.91%), Postives = 87/188 (46.28%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN---LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTA 642
            CG G   G   +G G  G       +  +++   F  +        C  + FYT  AF+ A K +P F + G++    REIAAFFA   HET               +C+ISEI+  + YC+     +PC    KYYGRGP+Q++WNYNY                    A D V++ ++A+WFWM +
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 67/191 (35.08%), Postives = 92/191 (48.17%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPP 651
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    +  REIA  FA   HET               +C+I EI+  S  YC   N  YPC  GK Y+GRGPIQL+WNYNY  C                 +++P ++ ++ +WFWM +  P
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
The following BLAST results are available for this feature:
BLAST of FC920645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_TOBAC1.776e-3746.29Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC5.166e-3745.71Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI7_ORYSJ7.460e-3639.90Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI7.460e-3639.90Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA6.535e-3241.71Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI4.103e-2634.62Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ4.246e-2337.57Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE8.007e-2233.89Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE1.784e-2131.91Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA1.510e-2035.08Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32011B10EF RVDevelop1 Citrus clementina cDNA clone C32011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920645 ID=FC920645; Name=FC920645; organism=Citrus clementina; type=EST; length=693bp
AGCAGAGGATAATTTCTTCATAACTGTTGCTTTCAAATGAGGCTTATTGC
GTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAG
CACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCAC
GGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGA
AGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCT
ACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGT
AACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGC
CCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAG
AATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCC
TACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCC
AATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAG
GGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCA
GTACTATCATTNCAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACC
AAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCA
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