FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.534e-71
Identity = 140/238 (58.82%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM+KVG+ GV+T+EE KS +  + +VEGMQFDRGYISPYFVTD E+M V+  N  LLL DKKIT+ +DLI  LE   R   P++IIAED+E EALATLVVNKLRG L + A+KAP FGER+   L DIAILTGG VI +EVGL L+ V   +LG AS V +TKDTT +V +   +  + KRV Q++  +   + +Y++EKL ERIAKL GGVAVI+VGA TETELK R+    DALNA
Sbjct:  163 AMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYFVTDPERMIVQLNNAYLLLTDKKITSIQDLIPTLERVARSGRPLVIIAEDVEGEALATLVVNKLRGVLNVVAVKAPAFGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGVAVIKVGAATETELKDRKLRLEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SILPO (60 kDa chaperonin OS=Silicibacter pomeroyi GN=groL PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.840e-71
Identity = 137/238 (57.56%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE K  E    VVEGMQFDRGY+SPYFVT+++KM  E E+C +LL +KK+++ + ++ +LE  I+   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A K+ +TKD TTIV     +  +  RVAQIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +   DALNA
Sbjct:  165 AMQKVGNEGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMIAELEDCMILLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGTAKKISITKDETTIVDGAGEKAEIEARVAQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SHEWM (60 kDa chaperonin OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=groL PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.285e-70
Identity = 135/238 (56.72%), Postives = 180/238 (75.63%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE E+  +LLVDKK++N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +V++TKD TTI+     QD +  RVAQI+   E +  DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELESPFILLVDKKVSNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVIITKDDTTIIDGTGEQDQIQARVAQIKVQAEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 266.159 bits (679), Expect = 1.285e-70
Identity = 138/238 (57.98%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + MA E ++  LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.285e-70
Identity = 138/238 (57.98%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + MA E ++  LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PSEA8 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groL PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.285e-70
Identity = 138/238 (57.98%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + MA E ++  LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PSEA7 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain PA7) GN=groL PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.285e-70
Identity = 138/238 (57.98%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + MA E ++  LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.285e-70
Identity = 136/238 (57.14%), Postives = 180/238 (75.63%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVGR GV+T+EEG++ ++ L VVEGMQFDRGY+SPYF+ + E  +VE +N  +LLVDKKI+N R+L+ VLE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGG VI +E+GL L+K   E LG A +V +TK+ +TI+     Q A+  RVAQIR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEGVAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGVVISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.285e-70
Identity = 137/238 (57.56%), Postives = 177/238 (74.37%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE K  E    VVEGMQFDRGY+SPYFVT+++KM  E E+C +LL +KK+++ + ++ +LE  I+   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG+A K+ +TKD TTIV     +  +  RVAQIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +   DALNA
Sbjct:  165 AMQKVGNEGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMTTELEDCIVLLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGSAKKIQITKDETTIVDGAGEKAEIEARVAQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_RHIME (60 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2 PE=2 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.285e-70
Identity = 135/238 (56.72%), Postives = 181/238 (76.05%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE K+AE  L VVEGM+FDRGY+SPYF+T+ EKM VE E+  +LL +KK++N + +I +LE  I+   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +E+G+ L+    + LG A ++++ K+TTTIV    +++ +  RVAQI+  IE+   DY+REKL ER+AKL+GGVAVI+VG  TE E+K + +   DAL+A
Sbjct:  165 AMEKVGNEGVITVEEAKTAEIELEVVEGMEFDRGYLSPYFITNQEKMRVELEDAYILLHEKKLSNLQAMIPILESVIQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKSMLEDIAILTGGTVISEELGIKLENTTMDTLGRAKRIMVDKETTTIVDGAGSKEDIGGRVAQIKAQIEDTTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHA 402          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_THEEB7.534e-7158.8260 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH60_SILPO9.840e-7157.5660 kDa chaperonin OS=Silicibacter pomeroyi GN=groL... [more]
CH60_SHEWM1.285e-7056.7260 kDa chaperonin OS=Shewanella woodyi (strain ATC... [more]
CH60_PSEAE1.285e-7057.9860 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro... [more]
CH60_PSEAB1.285e-7057.9860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA81.285e-7057.9860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA71.285e-7057.9860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH602_VIBC31.285e-7057.1460 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH602_ROSDO1.285e-7057.5660 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH602_RHIME1.285e-7056.7260 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2... [more]

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Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
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