FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.269e-67
Identity = 131/238 (55.04%), Postives = 173/238 (72.69%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EE K  +  L VVEGMQFDRGY+SPYFVT+ E M  E E   +L+ DKKI+N ++L+ +LE + +   P+LIIAEDIE EALAT+VVNKLRG LK+AA+KAPGFG+R+   L+DIAILTGGTVI +E G  L+      LG AS+V + KD TTIV     Q+ ++ R+ +I+  IE +  DY+ EKL ER+AKLSGGVAV+ +GA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAELEEALILIYDKKISNMKELLPILEKSAQSGRPLLIIAEDIEGEALATIVVNKLRGTLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATMAYLGQASRVNIDKDNTTIVEGKGKQEEITARINEIKGQIEKSTSDYDTEKLQERLAKLSGGVAVLNIGASTEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_RHOPA (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris GN=groL2 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.269e-67
Identity = 126/233 (54.08%), Postives = 173/233 (74.25%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSESRD 699
            AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT+++KM VE+++  +L+ +KK++N  +L+ +LE  ++   P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ ++ V  ++LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +  D
Sbjct:  165 AMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVD 397          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_BURXL (60 kDa chaperonin 2 OS=Burkholderia xenovorans (strain LB400) GN=groL2 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.269e-67
Identity = 133/238 (55.88%), Postives = 170/238 (71.43%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+E+GKS EN L VVEGMQFDRGY+SPYF+ D +K     ++  +LL DKKI++ RDL+ VLE A +   P+LIIAED+E EAL TLVVN +RG LK+AA+KAPGFG+R+   L+DIAILTG TVI +E G  L+K   E LG A +V + K+ T I+     Q  +  RV  IR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+K + +   DAL+A
Sbjct:  165 AMDKVGKEGVITVEDGKSLENELEVVEGMQFDRGYLSPYFINDPDKQVAHLDDPLILLHDKKISSIRDLLPVLEAAAKAGKPLLIIAEDVEGEALTTLVVNSMRGVLKVAAVKAPGFGDRRKALLEDIAILTGATVISEETGKQLEKATLEELGRAKRVEVQKENTIIIDGAGDQTRIDARVKAIRAQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.269e-67
Identity = 135/238 (56.72%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM  VG+ GV+T+EE KS    L V EGMQFDRGY+SPY VTD E+M   ++   LL+ DKKI+   DL+ +LE   R   P++IIAEDIE+EALATLVVNKLRG L +AA+KAPGFG+R+   L DIA+LT G VI ++ G+ L+ V  + LG A K+ +TKD TTIV +G+ + AV  R AQI+  IE  + +Y+REKL ER+AKLSGGVAVI+VGA TETELK R+    DA+NA
Sbjct:  164 AMETVGKEGVITVEESKSLTTELEVTEGMQFDRGYVSPYLVTDQERMEAVFDEPFLLITDKKISIITDLVPILEKVARAGRPLVIIAEDIEKEALATLVVNKLRGVLNVAAVKAPGFGDRRKAMLQDIAVLTDGEVISEDTGIKLENVTTDQLGKARKMTITKDNTTIVAEGN-EAAVKARCAQIKQQIEETDSEYDREKLQERLAKLSGGVAVIKVGAATETELKDRKLRIEDAVNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_POLSQ (60 kDa chaperonin OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 132/238 (55.46%), Postives = 170/238 (71.43%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+E+GKS E+ L VVEGMQFDRGY+SPYF+   EK     E+  +LL DKKI N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG +K  A+KAPGFG+R+   L+DIAILTGGTVI +E+GL L+K   E LG A ++ + K+ T I+       A+  RV  IR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEDGKSLEDELEVVEGMQFDRGYLSPYFINQPEKQVAVLESPYVLLFDKKIANIRDLLPVLEQVAKSGRPLLIIAEDVEGEALATLVVNNIRGIIKTCAVKAPGFGDRRKAMLEDIAILTGGTVIAEEIGLTLEKATLEHLGQAKRIEVGKENTIIIDGAGDAKAIEARVKNIRVQIEEATSDYDKEKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_HYDS0 (60 kDa chaperonin OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 126/238 (52.94%), Postives = 178/238 (74.79%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EE KS+E  L  V+GMQFDRGY+SPYF+TD++KM    EN  +L+ +KKI+N ++L+ VLE+ +R    ++IIAED+E EALATLVVN L+G ++  A+KAPGFG+R+  YL+DIAILTGG  I +++G+ L+ V  ++LG A KV++ K+ TTIVG    +  V  R+ QI+  I+    DY+REKL ER+AKLSGGVA+I+VGA TE+ELK +++   DA++A
Sbjct:  165 AMEKVGKDGVITVEESKSSETTLETVQGMQFDRGYLSPYFITDADKMQAVLENPYILIFEKKISNIKELLPVLENVVRVGRSLVIIAEDVEAEALATLVVNTLKGVIRAVAVKAPGFGQRRKDYLEDIAILTGGQAITEDLGIKLESVTLDMLGQAEKVIVDKENTTIVGGKGDKKKVEARIEQIKKQIKETTSDYDREKLQERLAKLSGGVAIIRVGAATESELKEKKARVEDAVHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_FUSNP (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. polymorphum GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 131/238 (55.04%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM+KVG TGV+T+EE KS E  L  VEGMQFD+GY+SPY VTDSE+M  E +N  +LL DKKI++ ++L+ +LE  ++ + P+LI+A+DIE EAL TLV+NKLRG L + A+KAP FG+R+   L+DIAILTGG VI +E G+ L++   + LG A  V +TKD T IV  G  Q  +S RV  I+  IE    DY++EKL ER+AKLSGGVAVI+VGA TE E+K ++    DALNA
Sbjct:  163 AMAKVGETGVITVEEAKSLETTLETVEGMQFDKGYVSPYMVTDSERMTAELDNPLILLTDKKISSMKELLPLLEQTVQMSKPVLIVADDIEGEALTTLVINKLRGTLNVVAVKAPAFGDRRKAILEDIAILTGGEVISEEKGMKLEEATIQQLGKAKTVKVTKDLTVIVDGGGEQKDISARVNSIKAQIEETTSDYDKEKLQERLAKLSGGVAVIKVGAATEVEMKDKKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_FUSNN (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. nucleatum GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 131/238 (55.04%), Postives = 172/238 (72.27%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM+KVG TGV+T+EE KS E  L +VEGMQFD+GY+SPY VTDSE+M  E +N  +LL DKKI++ ++L+ +LE  ++ + P+LI+A+DIE EAL TLV+NKLRG L + A+KAP FG+R+   L+DIAILTGG VI +E G+ L++   E LG A  V +TKD T IV  G  Q  +S RV  I+  I     DY++EKL ER+AKLSGGVAVI+VGA TE E+K ++    DALNA
Sbjct:  163 AMAKVGETGVITVEEAKSLETTLEIVEGMQFDKGYVSPYMVTDSERMTAELDNPLILLTDKKISSMKELLPLLEQTVQMSKPVLIVADDIEGEALTTLVINKLRGTLNVVAVKAPAFGDRRKAILEDIAILTGGEVISEEKGMKLEEATIEQLGKAKTVKVTKDLTVIVDGGGQQKDISARVNSIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATEVEMKDKKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ERWCT (60 kDa chaperonin OS=Erwinia carotovora subsp. atroseptica GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 132/238 (55.46%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   ++ L VVEGMQFDRGY+SPYF+   E  ++E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+GL L+K   E LG A +VV+ KDTT I+     + A+  RV QIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPETGSIELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGLELEKATLEDLGQAKRVVINKDTTIIIDGVGDEVAIQGRVTQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_BLOFL (60 kDa chaperonin OS=Blochmannia floridanus GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 130/238 (54.62%), Postives = 173/238 (72.69%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   ++ L VVEGMQFDRGY+SPYFV   E   VE E+  +LL DKKI+N R+++ +LE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILT GTVI +E+GL L+K   E +G A +V++TKD TTI+     + ++  RVAQI    + A  DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKEGVITVEEGSGLQDELDVVEGMQFDRGYLSPYFVNKPESGTVELEHPFILLADKKISNIREMLPILESVAKSGKPLLIIAEDVEGEALATLVVNNMRGIVKVTAVKAPGFGDRRKAMLQDIAILTSGTVISEEIGLELEKATLEDMGQAKRVLITKDATTIIDGVGNKSSIDSRVAQINQQRDEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CHLP82.269e-6755.0460 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH602_RHOPA2.269e-6754.0860 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_BURXL2.269e-6755.8860 kDa chaperonin 2 OS=Burkholderia xenovorans (st... [more]
CH601_GLOVI2.269e-6756.7260 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_POLSQ2.963e-6755.4660 kDa chaperonin OS=Polynucleobacter sp. (strain ... [more]
CH60_HYDS02.963e-6752.9460 kDa chaperonin OS=Hydrogenobaculum sp. (strain ... [more]
CH60_FUSNP2.963e-6755.0460 kDa chaperonin OS=Fusobacterium nucleatum subsp... [more]
CH60_FUSNN2.963e-6755.0460 kDa chaperonin OS=Fusobacterium nucleatum subsp... [more]
CH60_ERWCT2.963e-6755.4660 kDa chaperonin OS=Erwinia carotovora subsp. atr... [more]
CH60_BLOFL2.963e-6754.6260 kDa chaperonin OS=Blochmannia floridanus GN=gro... [more]

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Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
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